RnoEX0092131 @ rn6
Exon Skipping
Gene
ENSRNOG00000008058 | Tmprss5
Description
transmembrane serine protease 5 [Source:RGD Symbol;Acc:628625]
Coordinates
chr8:53420748-53423877:+
Coord C1 exon
chr8:53420748-53420861
Coord A exon
chr8:53422996-53423039
Coord C2 exon
chr8:53423715-53423877
Length
44 bp
Sequences
Splice sites
3' ss Seq
GGAACACCCCTATTTTGCAGCAC
3' ss Score
4.53
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GCTCACTCAACACAAGGCAGTGAATCTGTCTGACATCAAGCTCAACAGATCCCAGGAGTTTGCTCAGCTCTCTGCTAGACCGGGAAGCCTTGTAGAGGAGGCATGGCAGCCCAG
Seq A exon
CACTAACTGTCCTTCTGGCCGAATTGTTTCTCTCAAATGTTCTG
Seq C2 exon
AGTGTGGGGCAAGACCTCTGGCTTCTCGAATAGTTGGCGGTCAAGCTGTGGCTTCTGGGCGCTGGCCGTGGCAAGCTAGTGTGATGCTCGGCTCCCGACACACATGTGGGGCCTCTGTGCTGGCACCCTACTGGGTAGTGACTGCCGCCCACTGCATGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008058_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(38.8=100)
A:
PF154941=SRCR_2=FE(15.3=100)
C2:
PF154941=SRCR_2=PD(5.1=9.1),PF0008921=Trypsin=PU(19.0=80.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTTTGCTCAGCTCTCTGC
R:
AGCATCACACTAGCTTGCCAC
Band lengths:
148-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]