DreEX0080016 @ danRer10
Exon Skipping
Gene
ENSDARG00000087717 | tmprss5
Description
transmembrane protease, serine 5 [Source:ZFIN;Acc:ZDB-GENE-131121-184]
Coordinates
chr15:18232790-18234731:-
Coord C1 exon
chr15:18234618-18234731
Coord A exon
chr15:18233049-18233092
Coord C2 exon
chr15:18232790-18232952
Length
44 bp
Sequences
Splice sites
3' ss Seq
CCTTTTTCTTACTACTCCAGGGG
3' ss Score
9.32
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
Exon sequences
Seq C1 exon
ATTATCAAAGCACAAGGGAGTGAATCTGACTGATATCGGGCCGAATTATACAGATGGATTTGTCCAAATCACCTCAGAATACCAAAGCAATTTGGAGAGCTTATGGCGCTTCAG
Seq A exon
GGGAAGCTGTAGTACAGGAAAGGTTATAGCACTAAAATGTTTTG
Seq C2 exon
AGTGCGGCACCAGAGCAAAGTTACCCAGGATCATTGGAGGAGTGGAAGCTGCTCTGGGCCGATGGCCATGGCAAGTGAGTCTCTACTACAATAACCGTCACATCTGTGGAGGATCCATTATCACCAACCAGTGGATAGTTACAGCTGCTCATTGTGTGCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087717-'6-11,'6-10,7-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(38.8=100)
A:
PF154941=SRCR_2=FE(15.3=100)
C2:
PF154941=SRCR_2=PD(5.1=9.1),PF0008921=Trypsin=PU(18.9=80.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGACTGATATCGGGCCGAA
R:
GCAGCTTCCACTCCTCCAATG
Band lengths:
142-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]