MmuEX6065714 @ mm10
Exon Skipping
Gene
ENSMUSG00000032268 | Tmprss5
Description
transmembrane protease, serine 5 (spinesin) [Source:MGI Symbol;Acc:MGI:1933407]
Coordinates
chr9:49109342-49112350:+
Coord C1 exon
chr9:49109342-49109455
Coord A exon
chr9:49111468-49111511
Coord C2 exon
chr9:49112188-49112350
Length
44 bp
Sequences
Splice sites
3' ss Seq
GGAACACCCCTATTTTGCAGCGC
3' ss Score
5.12
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GCTTACTCAACACAAGGCCGTGAATCTGTCTGACATCAAGCTCAACAGATCCCAGGAGTTTGCTCAACTCTCTGCTAGACCGGGAGGCCTTGTAGAGGAGTCATGGAAACCCAG
Seq A exon
CGCTAACTGTCCTTCTGGCCGAATTGTTTCTCTCAAATGTTCTG
Seq C2 exon
AGTGTGGGGCAAGGCCTCTGGCTTCTCGAATAGTTGGCGGCCAAGCTGTGGCTTCTGGGCGCTGGCCATGGCAAGCTAGCGTGATGCTTGGCTCCCGGCACACGTGTGGGGCCTCTGTGTTGGCACCACACTGGGTAGTGACTGCTGCCCACTGCATGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032268_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PD(48.7=95.0)
A:
PF154941=SRCR_2=FE(15.3=100)
C2:
PF154941=SRCR_2=PD(5.1=9.1),PF0008921=Trypsin=PU(19.0=80.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAAGGCCGTGAATCTGTC
R:
CGCCAACTATTCGAGAAGCCA
Band lengths:
144-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types