MmuINT0162748 @ mm10
Intron Retention
Gene
ENSMUSG00000032268 | Tmprss5
Description
transmembrane protease, serine 5 (spinesin) [Source:MGI Symbol;Acc:MGI:1933407]
Coordinates
chr9:49111468-49112350:+
Coord C1 exon
chr9:49111468-49111511
Coord A exon
chr9:49111512-49112187
Coord C2 exon
chr9:49112188-49112350
Length
676 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CCAGCCTTTTCTGTTTGCAGAGT
3' ss Score
9
Exon sequences
Seq C1 exon
CGCTAACTGTCCTTCTGGCCGAATTGTTTCTCTCAAATGTTCTG
Seq A exon
GTGAGTCACATCCTGTGATCAGGAAGTTGGTGGTGAGAGGGAGGGAATCTTTCAGTTCTCCCGAGTGCGGAATTGCTGTATGGAGGGGCTCACTCAGGTTCCTGTGTGTGTGCATATGAGTTGGGTTGGGGGTGCCCTTGCCTTTCTGTTGGGCTCCTTTGCAGATACAACCTGCTTAAATAGAGTCCTTTGCTGTCTCCATCATGTGTCCCATCAGCCCCTGTGCTGGGCCGATGGTCTCTCTACTTCACTTCTGCCACTCTCTGCCCCTTCCTTCTGAAGAAGGATGCCTCTAAGTGGCATTATTACTGGTTGCAAAGATGCAAACTCTTAGTGGCTTCAAGAGACTAAGGGGTGGGCAGTACATTAGAGCCAAGTGATAAACATTGCACAGGGTTCCTTCACTCACTTTCCCATACACCTGCCTATTCATCAGTCTGTTCTCAAACCCAACATGCCTGGGCACTTTGATTTGTACAGTGGGATGGGCATTAGAGCTCCATCGACCCCATAGACATGGTCCCTGCTCTCCGCAGGTGCACAGGCGAAAGTAACCAATATAGTTATCTTCCTGTCCCCCTATTTATATTAAGAATAATAGAGATGAGCTGTCTACCCCAGCCCTCCCTCTGCACTCGGCACTTTTTCTTTCTATCCCAGCCTTTTCTGTTTGCAG
Seq C2 exon
AGTGTGGGGCAAGGCCTCTGGCTTCTCGAATAGTTGGCGGCCAAGCTGTGGCTTCTGGGCGCTGGCCATGGCAAGCTAGCGTGATGCTTGGCTCCCGGCACACGTGTGGGGCCTCTGTGTTGGCACCACACTGGGTAGTGACTGCTGCCCACTGCATGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032268:ENSMUST00000165088:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(15.3=100)
A:
NA
C2:
PF154941=SRCR_2=PD(5.1=9.1),PF0008921=Trypsin=PU(19.0=80.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTAACTGTCCTTCTGGCC
R:
CAGTGGGCAGCAGTCACTAC
Band lengths:
198-874
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types