HsaINT0169743 @ hg38
Intron Retention
Gene
ENSG00000166682 | TMPRSS5
Description
transmembrane protease, serine 5 [Source:HGNC Symbol;Acc:HGNC:14908]
Coordinates
chr11:113694478-113695443:-
Coord C1 exon
chr11:113695400-113695443
Coord A exon
chr11:113694641-113695399
Coord C2 exon
chr11:113694478-113694640
Length
759 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TCACCCATCTCTGTTGGCAGAGT
3' ss Score
7.02
Exon sequences
Seq C1 exon
GAACAACTGCACTTCTGGTCAAGTTGTTTCCCTCAGATGCTCTG
Seq A exon
GTGAGTCATATCTTGGTCTAGGGGAGGTGGCGGTGAGAGGAAGGGGTGTTCCCCCTGCCTCAAGTGTGGAAGAGCCCTATGGTGAGACTCTGCTGGGCCTGGGGTAGGGGTCTTGCCCACCTGCCCATCTGCCTGCCAGGCCCCTTCTTGCAGTTGCTGTTCTGCCCCAGCCGAACCCTTTCTAAGCCTCCATCATGTCCCTCACCAGCCACAGATCTGGGCTGATGATCTCCTTCCTTCACTACCTGCCACTCTCTTCCTTGGCCTCTGACACCAACTCCATCTTTCTTCTGGAAAGCCCCAGAGGTGAAATTATTATTGGCTATTGAGTGACCTGTTAGCAGCTTCAGGAAACTAAGGGCAGGTGGTGAATCAGGTACCAAACGGGAAGCAATCTGTGGAGTTCCTTTCATTGGTCTTCCCGTTCATCTACCCGTCTCTTCATCTGTCCATTCACACATCCTTCCACACACCAACACTTCGACCTTTACTACAGGACAGGCATTCTGTTAGGTACTAGGGCTCCATTAGTGCAGATACAGTTTCTGCTTTCAGTGGGCCCACAGCTGGATGGGGCAGGCAGGGGTGAAATCAACACTTCTACCTTCCCATCCCCCATACTTAGGACCAGGAATAAGAAAGGAGAGCTGTCCACACTGGCTCTCTGGGGCTTAGCACTGGGCCACGCTTCCTGAGAGTTAGGACCATGCTGACACTCACCTCTCTCTCTCTTTCTATCTCACCCATCTCTGTTGGCAG
Seq C2 exon
AGTGTGGAGCGAGGCCCCTGGCTTCCCGGATAGTTGGTGGGCAGTCTGTGGCTCCTGGGCGCTGGCCGTGGCAGGCCAGCGTGGCCCTGGGCTTCCGGCACACGTGTGGGGGCTCTGTGCTAGCGCCACGCTGGGTGGTGACTGCTGCACATTGTATGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166682:ENST00000299882:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(15.3=100)
A:
NA
C2:
PF154941=SRCR_2=PD(5.1=9.1),PF0008921=Trypsin=PU(19.0=80.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACTGCACTTCTGGTCAAGT
R:
TACAATGTGCAGCAGTCACCA
Band lengths:
198-957
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains