RnoINT0153417 @ rn6
Intron Retention
Gene
ENSRNOG00000008058 | Tmprss5
Description
transmembrane serine protease 5 [Source:RGD Symbol;Acc:628625]
Coordinates
chr8:53422996-53423877:+
Coord C1 exon
chr8:53422996-53423039
Coord A exon
chr8:53423040-53423714
Coord C2 exon
chr8:53423715-53423877
Length
675 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CTAACCTTTTCTGTTTGCAGAGT
3' ss Score
10.18
Exon sequences
Seq C1 exon
CACTAACTGTCCTTCTGGCCGAATTGTTTCTCTCAAATGTTCTG
Seq A exon
GTGAGTCATATCCTGTGATCAGGAAGTCGGTGGTGGGAGGGGAGGGAGTCTTCCTGGTCTCCTGAGTGCGGAAGAGCTGTATGGAGGGGGTCATTCAGGTTCCTGTGTGTGCATATGTGAGTTGGGCTGGCGTGACCTTGCCTACCTGCTCATCTTTCTGCTGGGCTCCTTGAAGACACAACCTGTTCATACAGAGTCCCTTGACATCTCTATCATGTGTCCCATCAGCCACTGCGCTGGGCTGATGGTCTCTCTCCCTCACCACTGCCACTCTCTGCCTCTTCCTTCTGAAGAGCCCTGTAAGTGGCATTATTACTGGGTGCAGATTCAAGCTCTGTCAGCAGCTGGGAGAGACTGAGGGGCGGGTAGTGCATTAGAGCCAAGTGATCAACATTGCGTAGGGTTCCTTTGCTCACTTCCCCATACGCCTGTCTACTTACCAGTCCCTTCTTGAACCCATCATGCCTGGACACTTTGACTTGTTCAATGGGATGGGCATGAGAGCTCCACAGACCCCATAGACGTGGTCCCTGGTCTCAGCCAGTGCACAGGCTGAGGTAACCAATACCGTTAACTTCCTGTCCCCTACTTATATAACAGAGGCAAGCTGTCTACTCCAGCCCTCCGTCTGCACTCGGCACTTTTTCTTTCTATCCTAACCTTTTCTGTTTGCAG
Seq C2 exon
AGTGTGGGGCAAGACCTCTGGCTTCTCGAATAGTTGGCGGTCAAGCTGTGGCTTCTGGGCGCTGGCCGTGGCAAGCTAGTGTGATGCTCGGCTCCCGACACACATGTGGGGCCTCTGTGCTGGCACCCTACTGGGTAGTGACTGCCGCCCACTGCATGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008058:ENSRNOT00000011107:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(15.3=100)
A:
NA
C2:
PF154941=SRCR_2=PD(5.1=9.1),PF0008921=Trypsin=PU(19.0=80.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTAACTGTCCTTCTGGCCG
R:
CAGTGGGCGGCAGTCACTA
Band lengths:
198-873
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]