BtaINT0150457 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017650 | TMPRSS5
Description
transmembrane protease, serine 5 [Source:HGNC Symbol;Acc:HGNC:14908]
Coordinates
chr15:24583332-24584167:-
Coord C1 exon
chr15:24584124-24584167
Coord A exon
chr15:24583495-24584123
Coord C2 exon
chr15:24583332-24583494
Length
629 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
GGGTGCTCCTCTGTTTGCAGAGT
3' ss Score
8.19
Exon sequences
Seq C1 exon
GGACCGCTGTGCTTCTGGTCAGATCGTCTCCCTCAAGTGTTCCG
Seq A exon
GTGAGTCCCCTTACGGGTCTGGGAAGGAGGCGGTGGGAGAAGGAGGTCTCCCTCATGCCCCTGGGTGGAAGAGCCCCAGTGGGAGGCTCGCCTGGGTCTAGGGGGATGTCTTGCCCACCCACCCACCGGGCCCTTCCTGCAGACACAGTTTTGCCAGGACAGAGCCCCATGGACGCCTCTGTTCTGTTCCCCACCAGCTGCTGACCTGGGCAGGCAACCTCCTTGCCTCACTCCCCGCCCTGGCCTCTGACACCCCCTCCCCTTCTTCCAGAGCACCCCAAAGGGGGACCAGCAGCTTCTAGAATCTAAGGAGGGCAAGGAACTAGGGGCCAAGTGGGAGACAGTGTGTAGAATTCCTTTCTCCCGTCTTCCCAGTCATCTAGCCATCTTCACGTGTCATCTTCCCACACGACAGGCCCCCATTTGACCTCTCCTATGGCCCAGGCGTTTTCTTAGGTCCTGTGGCTCCATGGACGATGCAGTCACAGTCCCTCCCTTAGTGAGACGGCCTTTCCGCTCCATGCTTAGGACCAGGAATGATAAACGGGAACTGTCCACACTCCCCGGCAGACAGCACCGTGCTGACAGCCACCTCTGTGTCCATCTCACGGGTGCTCCTCTGTTTGCAG
Seq C2 exon
AGTGTGGGGCCAGACCCCTGGCTTCCCGGATCGTGGGCGGGCAGGCAGCAGCTCCTGGGCGCTGGCCCTGGCAGGCCAGTGTGACCCTGGGCTCCCGGCACACATGTGGGGCCTCTGTTCTGGGCCCGCGCTGGGTGGTGACCGCGGCGCACTGCACGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017650:ENSBTAT00000023479:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(15.3=100)
A:
NA
C2:
PF154941=SRCR_2=PD(5.1=9.1),PF0008921=Trypsin=PU(19.0=80.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development