HsaEX6004750 @ hg38
Exon Skipping
Gene
ENSG00000166682 | TMPRSS5
Description
transmembrane protease, serine 5 [Source:HGNC Symbol;Acc:HGNC:14908]
Coordinates
chr11:113694478-113696971:-
Coord C1 exon
chr11:113696858-113696971
Coord A exon
chr11:113695400-113695443
Coord C2 exon
chr11:113694478-113694640
Length
44 bp
Sequences
Splice sites
3' ss Seq
TTGGTACCTCTGTTTTGCAGGAA
3' ss Score
8.44
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
ACTCACTCACCACAAGGGAGTAAACCTCACTGACATCAAACTCAACAGTTCCCAGGAGTTTGCTCAGCTCTCTCCTAGACTGGGAGGCTTCCTGGAGGAGGCGTGGCAGCCCAG
Seq A exon
GAACAACTGCACTTCTGGTCAAGTTGTTTCCCTCAGATGCTCTG
Seq C2 exon
AGTGTGGAGCGAGGCCCCTGGCTTCCCGGATAGTTGGTGGGCAGTCTGTGGCTCCTGGGCGCTGGCCGTGGCAGGCCAGCGTGGCCCTGGGCTTCCGGCACACGTGTGGGGGCTCTGTGCTAGCGCCACGCTGGGTGGTGACTGCTGCACATTGTATGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166682_MULTIEX3-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(38.8=100)
A:
PF154941=SRCR_2=FE(15.3=100)
C2:
PF154941=SRCR_2=PD(5.1=9.1),PF0008921=Trypsin=PU(19.0=80.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCACAAGGGAGTAAACCTCAC
R:
ACCAACTATCCGGGAAGCCAG
Band lengths:
145-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains