BtaEX6058162 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017650 | TMPRSS5
Description
transmembrane protease, serine 5 [Source:HGNC Symbol;Acc:HGNC:14908]
Coordinates
chr15:24583332-24585537:-
Coord C1 exon
chr15:24585424-24585537
Coord A exon
chr15:24584124-24584167
Coord C2 exon
chr15:24583332-24583494
Length
44 bp
Sequences
Splice sites
3' ss Seq
GCGCTGCCTCTGTTTTGCAGGGA
3' ss Score
9.59
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
ACTCACTCACCACAAGGCGGTGAACCTGTCTGATGTCAGGCTCAACAGTTCCAGGGAGTTTGCTCAGCTCTCTCCTAGACTGGAAGGCTTCCCGGAGGAGGTGTGGCAGCCTAG
Seq A exon
GGACCGCTGTGCTTCTGGTCAGATCGTCTCCCTCAAGTGTTCCG
Seq C2 exon
AGTGTGGGGCCAGACCCCTGGCTTCCCGGATCGTGGGCGGGCAGGCAGCAGCTCCTGGGCGCTGGCCCTGGCAGGCCAGTGTGACCCTGGGCTCCCGGCACACATGTGGGGCCTCTGTTCTGGGCCCGCGCTGGGTGGTGACCGCGGCGCACTGCACGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017650-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(38.8=100)
A:
PF154941=SRCR_2=FE(15.3=100)
C2:
PF154941=SRCR_2=PD(5.1=9.1),PF0008921=Trypsin=PU(19.0=80.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGGTGTGGCAGCCTAG
R:
GAACAGAGGCCCCACATGTG
Band lengths:
140-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]