GgaEX6025889 @ galGal4
Exon Skipping
Gene
ENSGALG00000007340 | TMPRSS5
Description
transmembrane protease, serine 5 [Source:HGNC Symbol;Acc:HGNC:14908]
Coordinates
chr24:5495692-5496187:-
Coord C1 exon
chr24:5496086-5496187
Coord A exon
chr24:5495931-5495974
Coord C2 exon
chr24:5495692-5495857
Length
44 bp
Sequences
Splice sites
3' ss Seq
ACCACCGTCCCCATGCACAGGAG
3' ss Score
7.04
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
AGCGGTACATCAGAAGGGGGTGAAGCTGACGGACGTGAGCATGGAGGACGGGCAGGAGTTTGCCCAGGTGGGGTCCAGCCTGGAGGACGCGTGGCAGATCAG
Seq A exon
GAGCAGCTGCGAGTCGGGCCGTGTTGTGGCCCTGCAGTGCTCAG
Seq C2 exon
CCTGCGGGCAGCAAACGGCACCGGGGGGCCGCGTGGTGGGGGGCGTGGATGCTGCCCCGGGGCGCTGGCCATGGCAGGTGAGTGTCCGCCACGGCTCCCGGCACCGCTGCGGTGGCTCCGTGCTGGCACCGCGCTGGATCGTCACCGCCGCCCATTGCGTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007340-'5-5,'5-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.036
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(36.2=100)
A:
PF154941=SRCR_2=FE(16.0=100)
C2:
PF154941=SRCR_2=PD(5.3=8.9),PF0008921=Trypsin=PU(19.1=78.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGAGTTTGCCCAGGTG
R:
GACACTCACCTGCCATGGC
Band lengths:
137-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]