DreINT0167189 @ danRer10
Intron Retention
Gene
ENSDARG00000017240 | traf5
Description
Tnf receptor-associated factor 5 [Source:ZFIN;Acc:ZDB-GENE-071120-3]
Coordinates
chr22:38359918-38364212:+
Coord C1 exon
chr22:38359918-38360010
Coord A exon
chr22:38360011-38364073
Coord C2 exon
chr22:38364074-38364212
Length
4063 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
ATTACTGTTATTATCTGCAGATG
3' ss Score
9.27
Exon sequences
Seq C1 exon
GATAAAAGGGGAAAAGTGCAGGTGCATGAAAACACAGAGTTCAGTGCACATGTCCGACTCGTCCTTGAAAGTAACACCAAACTGGAGAAACAG
Seq A exon
GTATGAAAATCAACAGGGAGAATGCAGTAAATGTGTAGCTCACCCAAAAATGAACTGTTCACTCTCCCTCAAGTGATTATAAACCATTATGACATTTGTTTTCCTCTGTTGAACACAAAAGAAGATATTTTGAAGAATGTGGTTAGCACGATCGCCTCATGGCGAGAAGGTCGCAGGTTCGAGTGCCGGCTGGTTCAGTTGGCGTTTCTATGTGGAGTTTGCATGTTCTCCCCGTGTTGGCGGGTTCCCTTCACAGTCCAAACACATGCGGTGTAGTGGAATTGATGAACTAAATTGGCCATAGTGTATGAGTGTGTGTGAATGACTGTGTATGGGTGTTTCCCAGTGCCAGTTTGCAGCCAGTAGGGCATCCGCTGTGTAAAACATATGCTGGAATAGTTGGTGGATCAGCTGTGATGACCAGTGATGAATAAAGGGACTAAGCATGAATGACTGTAAGCATTGACTTTCATAGTAGGAAAAGCAAATACTCCAGTAAGTGCTTACAGGCTTCCTGATTTCTTAAAAGACACTTTCTTTTGTGTTCAACAGAAGAAACACAATCGTAATGGTGTATAACCACTTGAGGGAGAGTAAATAGTGAGTACATTTTTATTCTCGCAGGAACTCTTCCTTTAATGTGAACGCAACAATGAGTTAATGTTTGTCATACAATTAATACACGAACACACTTCATTGAACGTACACATAGACATCACCTATTTAACTGCAGGCTAGCTGTGGTTATATATAACTTTAACTGGTAAAAGCTGTTAGTTAGTTAGCAGTGTTGTGCTAGTTACTGAAAAATAGTAACTAGTTACAGTTTCTAAATTCAAAAACGTAACTCAATTACTTCATTGATTACTTTAAGTTGTTCAGTTACTTTATCGATTACTTTAGTAACTCAGTTACTTTATCAATTACTTTAATAACTCAGTTACTTCATTGATTACTTTAGTAACTCAGTTACATCATCGATTACTTTGTTACACAATTACTTCATCAATTACTTTAGGTAACTCAGTTACTTTATCGATTACTTTAGTAACTCAGTTACTTCATCGATTACTTTAGGTAACTCAGTTACTTTTTATCGATTACTTTAATAACTCAGTTACTTCATCGATTACTTTAGGTAACTCAGTTACTTCATCGATTACTTTAGGTAACTCAGTTACTTTTTATCGATTACTTTAGTAACTCAGTTACTTTATCGATTACTTTAGTAACTCAGTTACTTCATCGATTACTTTAGTAACTCAGTTACTTTATCGATTACTTTAGTAACTCAGTTACTTTATCGATTACTTTAGTAACTCAGTTACTTTATCGATTACTTTAGTTAACTCAGTTACTTTATCGATTACTTTAGTAACTCAGTTACTTCATCGATTACTTTAGGTAACTCAGTTACTTTTTATCGATTACTTTAATAACTCAGTTACTTCATCGATTACTTTAGGTAACTCAGTTACTTTTTATCGATTACTTTAGTAACTCAGTTACTTTATCGATTACTTTAGTAACTCAGTTACTTCATCGATTACTTTAGTAACTCAGTTACTTTATCGATTACTTTAGTAACTCAGTTACTTTTATGAAGGACCGCACACACACACACACACACACATCGCAAAATGCAGAAGTTTTGTTCTTTCCGTTTGGCGTGCGTTATTAAATTCCATAACACTCTCACCTGTCTTTACTCCTTATTTGCGTCTAATATGACGCAATATGAATATGATAATATGAATGAAATGATTATGAGTGAATGTGACACTGCCAAACTGCAGTTAAAGTCAGCCAAAATTACAGGAAACCCCTACATGCATGTAATGTTTGATGTGGTCATTTCAGAGTAGGAATACACACAGGTTGAAGACCTGTTCTCGCCCCCTACAGTGCAATTCAGCCAGGTATACATTCGCGCTAAAATATCAAAAAGAAAGTCATCATAGCTTGCGAAGAGCAGACCCAGCTTCCAATAGATTAACGGCGATGGTTTGTTTCATCACTTGATAAGAGTCTCGCGTTACGACCCACCACTACTAATAACCTTAACTTTTCCAAATTTGTTTGTAATGCAATAATATATAGTTTTTGTAAAGCTGCTTTGAAACGGTAATTATTGTGAAAGGCACTATACTAATCAACTTAAATCTGAATCTTGTAGCATTAAAATCATTACTGTAAGAGCCATAATTAATATTGCTCAATTTCTTGTATTTTACACATGTTGATGAGCAGAGTTTGGTGTAACACGTTCCACAGTAATGCGCTACTGCATTGTAATTACATTTTTGGGGAACGAAGACATTTTAAATGTCCGTAATTTGATTATAGCTACTTAAGTCAGTGTACTTGCGTTACTAACATCATAATTATAGTTTTAGAAGAAAAAAACGCTTTTTTTAAATCACGTTTTCCACCTAAATCCACGCTTTTAAATAGCTGGAGAACGCGAGCTGAAATGGCTGCTGACAAGAGTGCCTGCTTCTGCAAGCAGAAATACAGACATTGCTTTGATTTCATTGAGAGTCAAAATAAAAGTTGTGAAATTCAGTCTAAAGAACCTTCAACTGCTTTTAATTTGACCAGCAACTTCTATTCATGCACTTGAACTGAAACCATTTCTACGACTTTAACATCATCAAGAAGGAAACCGGCGGCCAAAAACGCAGCGGCCCAACTCAGCCTAAACAGGCTGAACTGGATTTTTGTGCATGATCAGGAGTGAAGATATCTTCTGAATGTGAAGATACGTGTAGCTGCTTATGGGGCCGTTTGTATATTGCATATTTTGTGTGCTCTTGCATTTCCCAGGCACACCCAGTTGAAAGCTGCGAGTCACGTGACAAGAGCTGACCAATCATAATATGTAGGGAGTATACACATTTCGGTAGACTAATTACTTCAGACAAACACAGAACACCCAAACACTGCAGTGCTTTTGCACACAATAGATGTCAGTGGTTACAGATATCCAGTTTTCAGTGTTTAAAAAAAAGACAACAGGTTTGAAACAAGTGAATGATGAGAGAATCTTAAGTTTTGGGTGACGTCTTGACATCTTTTAAATATATCAAGCTGCTGTGATCAACCCATTGTAATGTTTCTCAGTGAATATTAAATTACTGACAGAACTTTATTCTAGGTATATTTTATGTGTCTTAAAAGTAACTTCAAAGTAAAGTAATTAGTAATCTGATTACTTTTTACATGCAGTAATTAGCAATGTAATCAGATCATAATTTTCCAGCAATTTGCAATCTCATTCATTCATTTTATTGTCGGCTTAGTCCCTTTATTAATCCATGGTCACCACAGTGGAATGAACTGCCAACTTATCCAGCACATTTTTACGCAGCGGATGCCCTTCCAGCCGCAACCCATCCTTGGGAAACATCCATACACACTCATACACTACAGACAATTTTAGCCTACCCAGTTCACCTGTACCGGATGTGTTTGGACTGTGGGGGAAACCGGAGGACCCGGAGGAAACCCCTGGGAACGCAGGGAGAACATGCAAACTCCACACAGAAACACCAACTGAGCCGAGGCTCGAACCAGCGACCCAGTGACCTTCTTACTGTGAGGCGACAGCACTACCTACTGCGCCACTGCGTCGCCCCTCATTTGTCTCAGTGAATATTAAATTACTGACAGAGCTTTATTCTAGGTATATTTGATATCTCTTAAAAGTAACTTCAAAGTAAAGTAATTAGTAATCTGATTAATTTTTACATGCAGTGATTAGCAATGTCATCAGATCACAATTTTCCAGCAATTTGCAATCTATTACTGTTCACTTAGCCAACACTGTTGATACGCTTAGTTGATTTCACCCCTACTCCTTTGTTTGTAATGGTTTGCTCCACCTTTATTGGACTTTTATATTACGAGATGCAAAAGTGAAAGAAAGAGGGAGCAGCACTGTTTTTTTTTGACAGACGTTTAATGTTATCCTACATGAGACTTCAGTAAACATCTGTAACTGGAACTAAGCTGACTGATTTCCTGAAGATCCTGATAGCACCATTACTGTTATTATCTGCAG
Seq C2 exon
ATGGAGCAGCTGCAGCAGGATATGCTGGTCCAGCAGGGGGTGCTGAAGGACAAGAGTCTGGTGGTCAGCAGCCTGGACCGGGACGTCTCCCTCTGTGACAACACACTTACTACATTACAGGTGAACAGACCCTGTGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017240:ENSDART00000137339:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=NA C2=0.045
Domain overlap (PFAM):
C1:
PF0217613=zf-TRAF=PD(13.6=25.8),PF057016=WEMBL=PU(18.1=93.5)
A:
NA
C2:
PF057016=WEMBL=FE(24.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]