HsaINT0171757 @ hg19
Intron Retention
Gene
ENSG00000082512 | TRAF5
Description
TNF receptor-associated factor 5 [Source:HGNC Symbol;Acc:12035]
Coordinates
chr1:211538718-211542934:+
Coord C1 exon
chr1:211538718-211538810
Coord A exon
chr1:211538811-211542793
Coord C2 exon
chr1:211542794-211542934
Length
3983 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
CCTCACGTTCCTGTTATTAGATT
3' ss Score
6.61
Exon sequences
Seq C1 exon
GATAAACGGAGGAACCTGCAGCAACATGAGCATTCAGCCTTACGGGAGCACATGCGTTTGGTTTTAGAAAAGAATGTCCAATTAGAAGAACAG
Seq A exon
GTAAATCTTCAAAGGTTCAAATAAAAAGTGAGGCAACAGAATTGCTGGGATTTACCTGCTCTATGCTGGTATTTTTCTATTCTCCCCTGTTTCAGTATAAGTCAATTAGAGGTAGATGTTTTTCTATTAAGTGGCCAAACAGGCTCATAGGATTATAGAACATTAGAATTGGAAGGTGCCCTTAGGATCCTTGGGTCCATCCTCCTCATTCAACAGATAAAATAACTGAACTCTGAGAAATTTTTATATGTTTTAATCGTAAGTAGCATAATTCAATCTCAAAATCCATGTCCTCTGATTCTAAGTCCAGTACTCCCCATGGTATACCATAACTGCCTCTCAATAGCCTGTCTACACACCTTTTGGTTAATATCTGACACTTAGCAATTTGATGTTTCAGTTAAATTAATATTACTGTGAAACAACAGTTGACTATTCTAAGCACTATGGGTTTTATAAATTTTGTGATAAGTCTAAACTGCCTTTGCAGAAGCTTTGCAACCCAATAAATGCATACATACACACTTATTTCACTGAGTTGTGATTATCAAGGGAAATTATATGCAAATGCCTGCCATAGTGCCTGTGGCATTCCTATTAACCTCAATAAATGCTGATTCTATTGAGCAATTTTTAGGAAAGTTAATTATTTTGTTAGAACATCTCAGAAAATCAGACTTTTCAAGCCCAGGTAGGGAAGAAAACCATCCATTTTCAGAAAAGGAGCTGATGTTTACTACTGCAGATGATTTTTTGATGTCTGATTTTCTATTAAAGTAGGTGTGTGAGTTCCAGGGTCAGATTCTGGAGAAAATTAGGAAGACTGATTAAACAGTAACTTTGGTAGAAGGCATGCTCCCTAGTAACCGTTCCCAAGTTTTTTCTGTATCAGTTGCCTCATTCATCCATCTTTTCATTCAAGAAACACCTACTGTATGTCAGGTACAATGTTTGCTGCTAGGGACACTGAGCCAAGGAAGATGTAGCCTCTACCCTTGAAGAACTAACATAAATGTAAACAGGTAAGTTGTCATGCCTTGTAGGACATGCTGTAACTCAGTCTGGGGTACAGAGACTGCAGCAGTTTATTCTAGGGGAGTTGGGGAAGACTTTCAAGGTAAGACATCCAAGCTGCCTCTTGAAGTAGGAAAGATTCATCAGTTAAAATGTTGTGGAAGAAGGACATCCAAAAGGGAGAGCTTGCACTGAAGCAGGGAGGCATAAGAAATCCTGATGAGTCAAGGAAATGGGGTTTTAGGATGAATGGACTTCTGAGTGTGAGATAGAGAAAGGCTAGAGACTGGTGTGTTGGATCCAGATTGCAGTGGCCTTCCGTGTAGCCTAAGAAGTTTTGAACACTGCATTCAATTATTTTTTTATCATTTATACTCTGCCTTGTTTCAGAAAGGTTTTAAGGGCCAGAAGTTTGAACTAATGTTTTTTTCAATAATAGGGAGCTAATGGAGGTTTCTTAATTGGAAAACACTTGGTCAGCTAATTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTGAGATAGGGTCTGGCCCTGTCACCCAGGCTGGAGTACACTGGTACGATCTGGACTGTCTGTAATCTCTGCCTCCTAGGCTCAAGAGATTCTCCTACCTCAGCCTCTTGAGTAGCTGGGACTATAGGTGTGCACCACCACACTCGGCTAATTTTTGTATTTTTTTTGTAGAGACAGGGTTTTGCCATGTTGTCCAGGCTGGTCTCATGAGCTCAAGCCATCTGCCTGCCTCAGCCGCCCAAAGCGGTTTGTTTGTTTTTCTTTTTTAAAGCAAGACAGTTGGTAATAGCATGGCAATTGATAAGAGTGAAGGCTCTGGAGCCAGAATGCTTGGGTTTGCAGCCAGGCTGCACACTAGCCATATGAGTTTGGACAAACTACCTCATTTCTGTCATCCCCAGTTTCCTCATTTGTAAATGGGGTTGTGGTGATGGTAAAAAGGGATAATATAGTTAAGCTAGTAGTACAATGCCTAACACATAATAAGTACTTCAATAGTAGGTGGAAGCAAGATGCTGGAGGTGGTGGTGGTGATGGTGAAGGCTCAACCAAGTCCATGTCAGTGGACTGGAAAGAGAGAGAGTATCAAGAGGCCTTCTGAGGTTGTAAATGACATGCAGAAAGCTGAGTAGGGAGGGGACATGGTAATGATATTAACCAAGATGGGCACTACAAAACTGGAGCATGTTAGAGGTGAGGGTGCAGAGAGAGACAAGGAGTTTGCTTTTGGTCAGGCAGGTAGGTGGAAGTCAGCTCTAGGGGTCTAAATAAAGGATTCCAGGGCCAGAGATCAAATGATTGTCTCAGCCATTTGTGCATTCATTCATAAAATATGTATCAAATGCCCTCTCTGTGCCAGGCACTGTCCTAGGCTCTAAGGATAAAGAAATAAATGAGATGTAGTCTCAAGATACAATTTAATGGAGAAGACCAAAACAACAACAAAAAGCAAGTTATAAGCATGATAATGATGATTTATACACTAGAATATGGACAGGGTATCATGGAACTTGAGAGGTGGTCTCGGCGGGTGGTGCAAGTAAGGAAATATTTCCAAGAGGATGTACCCATGAGTGGAGGCTTAAAAAGTGGTAGTTTTTAGATGAAGAGAGAGGTGTCTGAGAGGGCAGAGCCTGACAAAATAGGAGTTGTGTGGTCTTGCTGGGCAGGATGCATGTGGAATGTGAATGGGTTTGAGGCTGAAAGTGTAGCCAGGGGCAGGTCACGTAGGGCCCAGTGTCACCTGTAAAAGCAAGCCACTAGAAATGTTTATGCAGGGAAGGCTCAAGACCAGATTTGTCTCTTAATATTATTCTGGTCACAGTAAGGAGTACAAATTGAAGGAGAACAAGACTAAAGCCAGGGAGAGCATTCATGCTGTTCATTCATTTAACAAATATTTATTAAGCACCTACTGGTACCAGGCACCAGTCCAGTTGCTGGGGTCATAGTGGACTGTGAGGTTCATGGCAGTTCCAGCTCCCATGGAACTTATGTTCTGGTGTGTGCTGGGGGTAGAATGGGTAGAGCAGGACCAGTTAGAAAGCTGCTGTTGCAGCCCAAGAGAGAAATAATGAAGACTGAAACTAGTGCTGAAATGAGAAATGGATTTAAGTCTTTTTGTTTCTGTTGTCATGTTAAAAGTTAAAATTGGCAACTGTTGCAGATTGAATGGATATGGGAATAAGAGAAGAGCTGTCTAGGATCAGCTTTAGGTATCTGTTTCTTTCAAGTAGATTATAAAATCTGTCAATATGCTACCCACGCATTTTGCCTATCACTTGCTGGCTTGTATGCTGGATGGGTTACTTAAACTCTCTACCTCTGTTTCCTCATCTGAAAAATGAGTCTAATATTCGTGCAACTCATAGGGTTCTTTGAGGCATACAAGAGCTAATGAATATAAGGGTATGATAGACAGTCAGCAAGTTTTTGTCATTATTACTTTTGCTACTGTGCATGTAACATTTAATGTGGTATGGTGATCAGTACTCTTTGGTGGTAGTTTTATTTTGTTTTAAGAGACAAGGTGTCACTATGTTGCCCAGGCTAGACTCAATCTCCTGGACTCAAGTGATCCTCCCCATCAGCTTCCCAGGTACCTGAGATTACAGGGGCCTGGCTTCTGTGGTTGCTTAATAAGTCCATGTTGAATGAATGAAGAGAACCAGTTCAGTAAATTCAGTCAGGTGATGTCTGTCATTAGGTGAACCATCATAGTAGGTTAGGTATAGAAAAGGCTGATGAGAAATTCTGTAGATGTGGCTTTTTGGAACCACCTGTGAATATCTTCCTATAATTATGTAGGAATCTACCCTGTAAATATTTTCCTAGAAATAAATATGTAGATTTTTTCCTAGAAATACTTTCTTAGCTGCAAGTGCATGCATATTTTAACTATATGCATGCAGTTATATTCAGTGACTTTATTTTTCCTCACGTTCCTGTTATTAG
Seq C2 exon
ATTTCTGACTTACACAAGAGCCTAGAACAGAAAGAAAGTAAAATCCAGCAGCTAGCAGAAACTATAAAGAAACTTGAAAAGGAGTTCAAGCAGTTTGCACAGTTGTTTGGCAAAAATGGAAGCTTCCTCCCAAACATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000082512-TRAF5:NM_004619:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0217613=zf-TRAF=PD(13.6=25.8),PF059116=DUF869=FE(11.5=100),PF086146=ATG16=FE(40.5=100),PF100464=BLOC1_2=PU(18.4=58.1)
A:
NA
C2:
PF059116=DUF869=FE(17.6=100),PF086146=ATG16=PD(47.3=74.5),PF100464=BLOC1_2=FE(46.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)