DreINT0169091 @ danRer10
Intron Retention
Gene
ENSDARG00000012368 | ttc21b
Description
tetratricopeptide repeat domain 21B [Source:ZFIN;Acc:ZDB-GENE-031010-34]
Coordinates
chr9:50115941-50118201:-
Coord C1 exon
chr9:50118006-50118201
Coord A exon
chr9:50116166-50118005
Coord C2 exon
chr9:50115941-50116165
Length
1840 bp
Sequences
Splice sites
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
3' ss Seq
TGTGTGTGTGTGCCTTGCAGAAA
3' ss Score
11.22
Exon sequences
Seq C1 exon
GAACTCCACTGAGAAGCAGGAGTCCGAGCAGCTGGCTGTGAGAACAGCAGAGAAACTCTTAAAGGAGCTGAAGCCACAAACCCCTGTGGGACACGTTCAACTGCGCATCCTGGAGAACTACTGCTGTCTGGCCACCAAACAGAAGGCCAATGTGGAAAGAGCTCTCAACGTCTTTATCGAGATCGCAAACACTGAG
Seq A exon
GTTTGTGGGCATCACATGATGGACATAAATGCATATACATCCAAAAATTACACCGGAATCGCACCTTCAGCACAAACATATACTAGAATGTTTATAATATACATATAATCAGAATGTTTTTTTACTAAGCATGCATTATAATGATCAAATTCAGATTTTGGTCACATTTTACATTTAGGTTTAGTTCATGTGTTACTAACATCAGCTAAAAATGAACAATAGTTGTACAGCATTTATTAATAATCATAGTTCTGCTCTTATTCATCCATTTTTAAAATCCAAATTCTAGTTTGTTATCATTAGTTAGTGGACCGTGAGTTAACATGAAGTAACAATGCACAGCTTATTAATACTGTATATATTTACTGTATGTATTATTTATTATTTGTTCATGTTAGTAAATCGGTTAACTAAAATTCACTAATACAACCTTGTAATGTGTTACCAAGACTTCTGTGTGAAATAAACGTTGTGCTTTTGCACATTTCTGTTCATCAAAGACACCAATATATCATAGATTGCTCAAAAATGTGAAGCAGCACGCTTTTTTAATGATCATTAATTCATTGCACTCTATACCTGGCAAAAGTTTTAACAAAATAAAATATGATCATGCCTTGATTTTAAATTATTTAATTAGGACAGTAAGGTCTGACTTTGCTTAGACAAAAGTCACTTAACAGAAATAATGTCCAGTATAGAATATAAAGTCATGCTGCAGTGGAAACAGAATGAATATTGTGTCTGACTCCATCATGAGCTTGGAGGACTGCATCCATACATCTCTGCACTGACTCAAATCACTGATTAATAAAGTCATCTGAAATGGCAAAGAAAGCGTTCTTGCAGGACTCCCAGAGTTCATCAAGATTCTTTGGATTCATCTTCAATGCCTCCTCCATCTTACCCAGACATGCTTGTTCATAATGTTCATGTCTGGTGACTGGGCTGGCCAATCCTGGAGTACCTTGACCTTCTTTGCTTTCAGAAAACTTTGATGAGGCTGAAGTATGAGAAGGGCTATCCTGCTGAAGAATTTGCCTCTTTTGTGGATTTTAATGTAATGGGCAGTCTTGATACCTCAGGCTGTTAATTTCTCCCCCATGTCCCCATACTGAATGTAACCCCAAACCATGATTTTTCCTTCACCAAACTTGACTGATCTCTGTGAGAATCTTGGGTCCATGCGGGTTCCAATAGGCTTTCTGCGGTATTTGTGAAGATTGGGATGCAGTTCAACAGATAATTTATCAGAAAAATCCACCTTCTGCCACTTTTCTAAATGATTATCTAGAAGTCAAGTTATTATTTAATGTTCTTACAACTGGGATCGACGACAAGACTTTTGTCAGGTAGTGTATATTGATTGATCAGGTAACAGTGGTGATTGGTGTAAAGATACTGAAAATTCAGCTTTTCTTCACAGAAATAAAAAAAACTGATTTGTACTAAGAGTGACAAAATTTAAAACATTTTAGTGAACTATCCCTTTAAAGAGTACTGCATTTTGTGATAAACCAGGGGTGGCCAACCCTGTTCCTGGAGAGCCACCTTCCTGCAGATTTCAGCTGCAACCCATATCAAACACACCTGCCTGTAATTATCACGTGGTGTTCAGGTCCTAATTAATTGGTTCAGGTGTGTTTGATATGGGTTGTAACTGGCTCTCCAGGAACAGGGTTGGCCACCCCTGTGATAAACAATTGAGCATTAATCAAAAGACGAACATTTGATTTATCATATATCTAGTGCATGGACTTCTTTTAAGAACATGGTAACATTGGTGGTGTATATTATATATTAGTAAGCTTTTTTCTGTGTGTGTGTGTGTGCCTTGCAG
Seq C2 exon
AAAGATCATGTTCCTTCTCTTCTGGCTATGGCCACTGCATACATGATCCTGAAACAAACCCCACGAGCCCGAAACCAGCTCAAACGCATCGCCAAGATGAACTGGAACATAATTGATGCGGATGAGTTTGAGAAGAGCTGGCTGCTGCTTGCCGACATTTACATCCAGTCTGGGAAATATGACATGGCAGGAGATCTGCTGAAGAGATGCCTGCGCCACAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012368:ENSDART00000044270:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.197 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134141=TPR_11=PU(47.8=42.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAGCTGAAGCCACAAACC
R:
GCAGGCATCTCTTCAGCAGAT
Band lengths:
349-2189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]