GgaINT0048256 @ galGal3
Intron Retention
Gene
ENSGALG00000010956 | TTC21B
Description
NA
Coordinates
chr7:21156708-21157812:+
Coord C1 exon
chr7:21156708-21156903
Coord A exon
chr7:21156904-21157587
Coord C2 exon
chr7:21157588-21157812
Length
684 bp
Sequences
Splice sites
5' ss Seq
GAGGTTAGT
5' ss Score
7.15
3' ss Seq
CACTATGCTTTTTTCTGCAGAAG
3' ss Score
9.02
Exon sequences
Seq C1 exon
TAATTCAACAGAGAAGCAGGAGTCTGTGCAGTTGGCTGTAAGAACAGCAGAAAATCTTCTGAAGGAACTCAAGCCTCAGACCATTCAGGGCCACATTCAGCTGCGAATCATGGAAAATTATTGTCTCATGGCAACCAAACAGAAATCAAACGTCGAACGAGCACTGAACACTTTCACTGAAATAGTAGTGGCTGAG
Seq A exon
GTTAGTACTTGTCTCATTTCCATAGTCTTCTTCCTTACGCTTACTAGAATTATTTAGTCTCATAGTTCATATTAGGTATAATGTGAACTAATTAGAGTATTTTATTTGAAATATACAAAGAAGCTCGCACCGAAATAACATATTTAAAAAAATCTTGCATTGGATTGAAAACTTAGACCTCAACTGTATGCTGATATTGTCTGTTATTGAAGTGTCTATTGGCTTTTGGTTTGAGTTCTTGGGTTTGTTTAAGTTTCAGTTGTATTTTAACCCTGAGAGGCAGCTAAGCACCACACAGCCACTTGCTCACCCTCTGCAGCAGGTTGAGGGAGAGACTCGGGAAGATAAAAATGCAGGAACTCATAGGTTAAGGTAAAGTTAGTTCACTAGGTAAAGCAGAAATATCTGTGGATTCTTCCTGAGCCTGGGTACAGTTGTCTTGAGCTCAGACCTGTATTAAGTCTCTTAAATATTTAACCTGGTCCTTGTGATTACTATTATAAGAATAATTGTTGCGCTAGATGGAAACACATCTATAAGATTGGATGTTGTATCTTTAGTTCCTGTAATATAGCTTTTAATTTAACTTCCTGATGTCTTTTCTTATTACTTAGGAGAAAAAAAATGTTTCTTAAAAGTAAAAAATTGACAATTACCAAGTAGTCACTATGCTTTTTTCTGCAG
Seq C2 exon
AAGGATCATATACCAGCACTTCTGGGAATGGCTACAGCCTACATGATCTTGAAACAGACTCCACGAGCTAGAAATCAGTTAAAGCGGATTTCAAAAATGAACTGGAATCCCATTGATGCAGAGGAGTTTGAAAAGAGTTGGCTTCTGCTTGCAGACATATATATTCAGTCTTCAAAATATGATACAGCAGGTGAATTATTAAAACAGTGCCTTCGGCATAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010956:ENSGALT00000017831:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134241=TPR_12=PU(97.4=98.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGAAGCAGGAGTCTGTGC
R:
CTGCAAGCAGAAGCCAACTCT
Band lengths:
342-1026
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]