DreINT0170308 @ danRer10
Intron Retention
Gene
ENSDARG00000037559 | uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2009]
Coordinates
chr23:20734507-20737135:+
Coord C1 exon
chr23:20734507-20734608
Coord A exon
chr23:20734609-20737034
Coord C2 exon
chr23:20737035-20737135
Length
2426 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
CTTGCCCTTTCCTCCATCAGAAT
3' ss Score
9.61
Exon sequences
Seq C1 exon
TACTACGAGATTGATTGGACACTTTGGGACCGTTTTGAGGTGAAGGGCATTCAGCCTAATGGAGAGGAAATGACACTCCGGCAGTTCCTGGATTATTTCAAG
Seq A exon
GTAACATTTCATGATCATTTCTAAAATGTTTAAAGAAACTTGACATGGATATTTTGATTATTTTATTTGAGTAACCTATGGATAATTTGGGGCTATAAACAATGTTTAAAAAAAAACATGAAGTAAGTTTTGAAGTATGACAAAAAATTTTTTTACCTTCTATTGTGAAGCAGCTTTTAGTTTGCAGAAAGGTGCTATATAAACGTAAATAAACATTATTACTAATGTAACTTTCCAACAGTCATGTCTAGAGTGAAAGGTTTTAAGCAAAAGAAATCCATAATACTGAAAACATTTTCAGATTTTTCAGTAAATGTGTTTTGTATACTGTACTTTCTCCGTAAGCTTGCAGTTTTTTTATAAACTCCTAAACATAGTTCAGCATTTCTGATCAGATTTTAAGGTAATTGTCTCTGAAATACAAAAGGTCTTCGTCACATACTGACAAAATAACTCTTAAATATCTTTATATACATTTTAATATTTTTTAGCTGTAATTTAGACAATAAGAAATTATGTAATACAAGAAATTATTAATGTATTGTCATGTTAAATGGTTTTAAATGCGCTATGTGGAGCATTGAACTGCCCAACACAAAGCGGAAGGTGGGTTGCTTCTGAAGTGCCATCTATTGATCAGAGTTACTATGGTTTCTGCTCATTTTTGATGGAAGCACACTTCTTTCAAACTGCAATTAAAACTGACTAGAACTACCTGCTTTTTAAACGATTTAAATGCACATCTTTGAGCCAATCACAATAAGCACACCACATTTTCATTAATTCATTTTTTCAGCTCTTAATTTTCCAACAATCCCAATCTCAAAAACATGTGTTATTAAAAATAACATTGTTAACTCTTTTTACCATCATGTTTTAATTACCTTCCTTACAATAACATTTGTTTAAAGTTTCTCCATTTATTTAATGCAGAGGATACTGAGCTGACCTATATTTTTTATTATTAAATTATTATTGTTGTTTGATTAAATGTATTAAATTCAAATCATATTTTGATAGGGCAAGTGAAAATCTTTTCCAACTGGCATATAAAAAAAAAAAATCAAATTTCTTTTCATTCATAATAGTCTAAAAAAGTCTTAAATTTAACTTTGAAACCTGCCGAAAACCTGAGTATATAAGCTCTGCATTGAAGTATTTTTTTGCTTTTTGTTACATTTTAAGGCCCGGACACACCAAGCCGTCTGTCTGTCTAGTTAGTTTTGTGTTCTACATGTCGCCAAGTTGGCCTGATTCAGCATGTAGAATCAGCATTGGCTGAAGTTAGCAATCTGACTGGTTATTCAGCAACAAATCAAAACTGAAGTGACATAACCAAGTAAACAATACAAGTAAGAGGGAACACAGAGGTCAGCTCAATGGAGACATCTGAAAACAAAGGCTTTTTGATTGGGGCTTTTTCCTCAACATTAAGTGCAAAAACTTCAGTCTTGCACCCGTTCCTTAAGTTCAGACTTTGCAGGTTTGGTTAGGAAAACAAACTCTCACGAACACGTCGGGCAAATCTTCAAAAGGAACAGTGTAGGCTACTTTATATCAATATTCGCATCACCCTGGCTATGTTGTTTCACTTTCTTAACAATAAAAGGGAAGCATGATATGAGGAGCTGCCTATTTTCATCTTGAAAAACTTAACTTACACAAAACGTTGAGGCATCGTGTAACAGTCACCTTCACTGTATGCAGTTTTATAACAAAACAGAGCCTACAACATAACTGCCTCCTTTCCTTTTCTTCGAAAAATGTCTCTTGCTGTATATCAGTTTTAAAAATCAATAATGGCCATTATTAAAGTATAATGAACACTAAATGGATACAATATAGGAAATAAAGGCAAGCAATCAGTTAAAATGCAGAATCAGTGTAAGTGGTTACATCATCTTCGCGCTCAGCTAAACAAGTTACCTGAAAACAAGTAATGGATTCAAAAAACCAAAGAGTTTTCTGATAGAGACAAGACGGTTTTATATCACATTTAACAACTATAGTGAGATGAAATCCAGCGGAAGATCTTTGAACTGACTTCCTGGAGCTCTATCACCGCATGCCAGTATGTGTGTGGTCATGTGATGTGCGTTTTCAGCTGTGTAGTATGGATAGATCTTTTCAGAAACTTTATATGAAACACCAGTGTGTACGTGGGTCGTTTTTATTCTAAAGTGCTGTTTTAAAACTAAAAGATATTCGTGTAAACAGGGCCTCAGTGTCTTAACGTGACATTCCTTTCTTACCCAGTTAACATTAGGAAATTAGTTAAAGTAGAGATTAAATTAGTTTATAATTCAATTGAATAGCATGACATTTTTTATTTATTTATTTTTTTTTATACATTTTTCTAAAAGGCAAAGAGGTTTTTTTCAATCTCTACCTTGTTTACTCATTGTTCTTGCCCTTTCCTCCATCAG
Seq C2 exon
AATGAACACAAACTGGAGATCACGATGCTCTCTCAGGGAGTTTCTATGCTCTACTCTTTCTTCATGCCTGCAGCCAAACTCAAAGAAAGACTGGAACTACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037559:ENSDART00000054691:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF093585=UBA_e1_C=FE(25.0=100)
A:
NA
C2:
PF093585=UBA_e1_C=FE(25.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]