RnoINT0158934 @ rn6
Intron Retention
Gene
ENSRNOG00000019164 | Uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:RGD Symbol;Acc:1359327]
Coordinates
chrX:1723666-1723963:-
Coord C1 exon
chrX:1723862-1723963
Coord A exon
chrX:1723767-1723861
Coord C2 exon
chrX:1723666-1723766
Length
95 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
TTTCCCCTCCTATCTTCCAGACG
3' ss Score
11.33
Exon sequences
Seq C1 exon
TACTATAATCAAGAGTGGACATTGTGGGATCGCTTTGAAGTACAAGGGCTACAGCCTAATGGTGAGGAGATGACTCTCAAGCAGTTCCTTGATTACTTTAAG
Seq A exon
GTATGTCCTTTCTCCTTTCCCTACACCTGGAGGACAAGCTGTATAGATAACATTTTAGTCCTCATAACACTGCTGTTTCCCCTCCTATCTTCCAG
Seq C2 exon
ACGGAGCACAAATTAGAGATCACCATGCTGTCCCAGGGTGTGTCCATGCTCTATTCTTTCTTCATGCCAGCTGCTAAGCTCAAGGAACGGTTGGATCAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019164:ENSRNOT00000031115:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF093585=UBA_e1_C=FE(25.0=100)
A:
NA
C2:
PF093585=UBA_e1_C=FE(25.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGACATTGTGGGATCGCTT
R:
ACCGTTCCTTGAGCTTAGCAG
Band lengths:
179-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]