DreINT0171861 @ danRer10
Intron Retention
Gene
ENSDARG00000033327 | unc5b
Description
unc-5 homolog B (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-041213-1]
Coordinates
chr13:29065884-29068616:+
Coord C1 exon
chr13:29065884-29065987
Coord A exon
chr13:29065988-29068435
Coord C2 exon
chr13:29068436-29068616
Length
2448 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCTG
5' ss Score
2.64
3' ss Seq
GATTTTTTGTAATGTCACAGGTG
3' ss Score
7.63
Exon sequences
Seq C1 exon
ACTTGAGAAAGAACTTTGAGCAGGAGCCGCTTGGCAGGGAGGTGCGTCTGGAGCAGGAAGTATTACTGCAGTGTCGTCCACCAGAGGGCAGCCCGCCTGCTGAG
Seq A exon
GTGCTGTATTGTCTTCCTATGCTTTTTGCATATTTTACAGTCTATGATATAGAGGTGGATTTAACCAATAAGCTAGATTAGCGGCTGCTTAGGGCCCCAGGAAATCTGAGTGCCCCCAAATAAATACCTAGATGTTTAAATTATACCTTTAAATTATATGTAACATAATTTTCTATCATATATCATATGATGAGTGTAAAAAAAAAAGTTTAATGTTTATTACATCTGCGCAAATGTGCCCACCCCCTCAATCATGGAGTATTCCAGCAGTCAAATTAGGTAAAGATTCAGTTTTAAAAATTAAATATTTTATATAAAATTTTAGTTGTGAATTCATTTTAAGAAAGCAAATCATTTCAACAGTTTTACAAGATGCTTTACATGTGTTATTATTATTTTGCATTAAGACAAAATGTAGAAAAGGAGTGATGGAGTGATATAAGAAAAACAGCTAAATAAATCAATTAAAAATAAATTAAAATAGAAAAGGTGCATAATTGCTTAGGACCCTCAAATCACTAAATCTGCCCGTCTGTATATTTAGCAATTATATATAGTTTTATTAGAATTATTAGCACACTTGAATTATTAGCTCCCCTGTATATTTTCCTCAAATTCTGTTTAATGGGGATTTAATAACTGATTTACAATAACTAATTTCTTTGACATGATGACTGAATATAATATTTTACTAGATATTGTTCAAGACACTAGTAATGAGCTTAAAGTGACATTTAAAGGCTTAACTAAGTTAATTAGGTTTATTAGACAGTTAGGGTAATTAGGCATTAGGTCATTGAACCACAGTGATTTATACTATAGATAATCTAAAAAAAAATATTGCTTATTGGAGATAATAATATTGAACTTAAATATACAATATATAACAAAAATAGAAAAAAAATATTATGAGAATCACTATTCCTTGCTCTGTTAAACATAATTTGGGAAATATTTTATAAATAATAAATATTGCACATTGCACAGGAGGGTAAATCATTTTATATACTCACTGGTCCACTTTATTGGATACACCTTCCTGGTAGCGTGTTGGACCCACGTTTGCCTTCAGAACTGCCTTAATCCTTTCTGGCATAGATTCAACAAGGAACTAGAAATATTCCTCAGAGATATTGCTCCATATTGACACGATAGCATCACCCAGTTGCTGCAGGCTGCATATCCATGATCTTCTGTTCCACCACATCTCAAAGGTTCTCTATTGGATTGAGCTCTTGTGACTGTGGAGGCTGTTTGAGTACTGCAACCTCATTGTCAAGTTCAAGAAAACAGTCTGACATGATTTGTGCTTTATGACATGGCATGTTATCCTGCTGGAAATAGCCATCAAAGGTTTGGTACACTGTGGTCATAAAGTGATGGACATGGTGAGCAACAATACTCAGGTAGGCTGTGACGTTGACACAATGCTCAATTGGTACTAATGGACCCAAAGTGTGGCAAGAAAAAATCCCCACACAGAACTGCGGCTCATTGGATATTTTCTCTTTTTTGGGCAATTCTCTGTAAACCTTAGAGATGGCTGTGTGTGAAAATACAAGACCAGCTCATCTAGCACCAACAACCATGCCACGTTCAAAGTCACTTAAATCACCTTTCTTCCCCATTCTGATGCTCGGTTTGAACTGCAGCAGATCGTCTTGACGCTGGATGTGTCTATAACCGCCTACTACTCAGTTGGTACTGCATTTGAATTTAAACGTACTACTCGTTTGTTAGAAAAATGTGTCAGTTGCGTCGCTTCACTCCCATTCATGAATTCACTCACCAGGCATCATGGGATAGCGCAGCATGCATGGGATGCGCACTTCAGAATCTCACCGGAAATAATAAGTCATCCGGGTACTCGCATACTGATTTTTGAATTCTATGAATTCGGACATACTACTCTGCTCGCATACTAATTTTAGCGTACTATATTCTATGGAAGTATGCAGTATCGGACGCAGCCCATGTCTACATGCCTAAATGCATTGAGTTGCTGCCATGTGATTGGCTGATTAGAAATTTGCATTAACGAGCAGTTGGACAAGTGTACCTAATAATGTGGCCAGTGAGTGTAAAAAGGATACATTCTCCCCAAAGGATACATCTCCATCCATATCATGTAATTGTGCAAATGTTTTTTTTGACCCTGGATTAAATTTTCAATTATATTTTAGGATGCAAAGGTTAAAATTACATCAAATTTAAATATATTTAAAATGTGTAAAGATATTTAATTGTTCCTCACATTTATTTATATTTGAAATAAATATTGCCATAAATTATTTTATTTTATTTTATTTACCATATGGTGGAAAACATCTTTTAGAGCACGTCTGGTGCTTTTTAATGTTCTATTAAAATAATTTAAAGTGCAGTTTTGGTCCAGATGCACATCGTTGTTCTTGTAACTTTATGCATTGATTTTTTGTAATGTCACAG
Seq C2 exon
GTGGACTGGCTAAAGAACGAAGAGCTCATTGACCCGGCGCTGGATTCTAACTTTCTAATTACCATCGAGCACGACCTGATCATCAAACAGGCTCGACTCTCTGACACTGCCAACTACACCTGTGTGGCACGTAATGTGGTCGCTAAGAGACGCAGCAGCACTGCCACTCTCATCGTCTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033327:ENSDART00000045951:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.049
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(34.1=88.6)
A:
NA
C2:
PF0767911=I-set=PD(64.8=96.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]