DreINT0174208 @ danRer10
Intron Retention
Gene
ENSDARG00000017119 | vps37a
Description
vacuolar protein sorting 37A [Source:ZFIN;Acc:ZDB-GENE-030131-8312]
Coordinates
chr1:15774080-15777244:+
Coord C1 exon
chr1:15774080-15774197
Coord A exon
chr1:15774198-15777146
Coord C2 exon
chr1:15777147-15777244
Length
2949 bp
Sequences
Splice sites
5' ss Seq
AATGTAGGT
5' ss Score
5.12
3' ss Seq
TCTTTTTTCCTTCTCTCTAGTTT
3' ss Score
10.79
Exon sequences
Seq C1 exon
CTTGCTCCCCCCACAGTTCCCTCAGGAGAAACCAGTGGTTAGTGTTTTTCCTCCAGTGGGTCATCATTTAGTAGACGGCAACAATGGAACAATGGTTACCAGCCCACTCATAGCTAAT
Seq A exon
GTAGGTGTTTCTTAATTTTATTTATTTAGATTTTTAAAATAAAACCATTATTTGCATTTACCATAACTGTTTCTTTTCAAATATCCATGAAATCAAAATACAGAAAATATATATTTTTTAAATAGAATTTTGCTGTGTCTATTGTTAAAGATCTACCTGTGCATAAGATTTTTCACTGTATTGTTTTAAATTCACATACCTTCATAATCTACAATCAAAATAACCTCTTGCTACAAGACATTTCCTCTCTGATCACATGTGTACCAGTGTAGGTGCATAACAGCCTGTCAGTAATGAGAAATCACAGCAATAGCAAACATGCAAAATTTCAGATCATGAAATCTCGAATCAAGTCTTTTCTTTTTTGAAAAGCTATTTGAGTTAGATATACATTTTAATAGAGAAAAAAAACTATAGCAAGTTCAGTTTAATTCAATCTTTAATATATTCCTGGTCTTATTCTGCACCATTTATCATTCAGTCATTAATTTTTCTTCAGCTTAGCTCCTCATTTATCAGGGGTCACCACAGCGGAATGAACCAACTATTGCGGCATATGTTTTACATAGCATATGCCCTTTCCAGCCGCGTTAAGTTCCTGATAATAAAAGATTAATTTAAGGCTGAAAAAGAATAGGACTGAATTGCTTTTATAGTGTAAACACTCTTGTGGTCAAATTTAATTCAAACAACCAATAAAGACCAGCTACTCCCTACATATATATTTAAAAGAACTGTTCTCAGTGTAGTTGTGTAGGTCTGTTTTTTTTTTTTTTTTTTTGTATAAATCTTTTCACTTTCGCATTCACATATAGACCATTTCAATGTGGTGATGTCATTGGCCAATGAACATTTCCTGCTTGTTGTCAAACTAGAGGGAATTCAATCATAGCTTGATATTAAAACAACATCAAGACATTATTTATCAATATGCAGACCTTTTTGGATTGTTAGGGTCTATAAAATTAAAAATGTAAAACAGAAAATACTTTAGGACCTTTGTTATTGTTTACATCCCTCAAAATGGTAGTTTGCAATATAAGAAAAACCAATACATACACACTAGGGATGGGAAGATTAACCGATATGTATCGATACGCGGTCATGCGCGTGCACGATGCGAGTGCATCGGTAGAGCAGCAGAGGATGAATGAAATTTTGGAAGCAAATCGAGATGCATCGGTTTTTGCGAGATGCATCGATTTTTCCGAGATACAGCTTATATTTTTAATATAGAATGTATTTTTTATTTATTAACAAGTGTTGTCAACCTGCTTTTGGCGCATAATTTAATCGACCTACATAAAGTAAGCCTTAGCAACGGATTTGCGGATGTGCACACACTACAACTCAGTGTATCAGGTGTGCGGATGAAGCTAGTGGAGCGCCCTCAGAAAGCGCGAGAAGCAAAACAAACATTTTATTCCCCACTGAGTTTTAAATCTAAAGTATGGCAAGCAACATTATGGATTTAAGGATGGACGACATGACAGGACAGATGCAATTTGCAAAATGTGCCGCGCATCTGTAAAATACGCGGGCAGTACGACTAATCTGATATCTCACTTGAAGCGGCGCCTCGGTGTTGTTGTGAAAGCATCTTCTAATGTTTCTGCATCCCCGGCTTTCGCACTGCTTCAACCAGCTCCAAAAGTGGTGAGAAAAGCATTGAAAGTTTTTTTTTTCCATGCGCAACAGTTCTGTTTGCTCTACGCCAATAACGAATGCTATTGCATTGTTCATCTGCAAAGATATTCAGCCTAGTGTCACGGAGAACGAATGTTTTAAACACCTCCTCCTGTTAATTTTTATTTAATTATAATAATAATAATATTAATAATAATAATGATAAAAATAATTGGGTGTCACGGTGGCACAGTGGGTAGTTTGACCACCTCACAGCAAGAAGATTGCTGGTTTGTTATATTTTTATTAGCCTGTTGTTTACAGTGACAGTGATGTTTCAACGCAGCATAACACTGCTAGTTCACGACCTTAAGTTTTGAATAATCAGTGGCAAAATATATCTTTGTAAAACTTGTTTTCATAGTTGAAAAGTTAAATCACAATTTTTGTTGTGCAATGCTAAATTTATTTATGTTGAAAGAGTGCAAATATATATATATATATATATATATATATATATATATATATATTTAATATATATTGCACTTATACATTCTGTTTATCTTGAAAATACTTAAATAATATGTGCTATAGGTTCTAAAATGGCCCTCTACTGTAAACTGACACTCTGGCTCTGAGAGAAGAGCCAGTTTGTAAAAAAGTCTTGGTTTTGCTTGGTTAATAAATAATCAAACTCATTCAATGGCACAGCGTCCTCTTTCACATCATCTCATAAACTTGATCTAATTAGTTAGTGCTGAATTATCGCATCGTATCGTGATATGGGTGTGAATCGTATCGTGTTGCATCGCAATATGTCACAAATGTATCGCTAATATATCGGATCGTATTCTTTGTATCGAGATGCGTATCGGATCGGCATTATAGCTTAGATGCCCAACCCTAATACACACATATGTTTTCTCCTTAAAGAAATTTGTAAAGTGATCAAAAATGGAAAAAGAAGTTGATGTGAACAAAACATGTGAACAAACATTTTTCTCTCATCTACATCTAGTCTAATTCACAAAAACATCCATTTCAATGAGGTGATGTCATTGGCCCATGGACATTTCCTGCTTGTTATTAAACTATTTCATAACTGTAACAAGAGGCAATTCAATTATAACTTAATGTTAAAACTGATATCATAATATTATTTATCCATATGTGGCTCTTTTTGAATTCTCAGAAGTTATGGTAATTAAAAATGTAAAACAGGAAATACGTTGAGACCATTGTTTACATCCATCAAAATGGTCTAAGGTGTAAACAGTTCCATTAGCATAATATTGTACCATTTTCTTTTTTCCTTCTCTCTAG
Seq C2 exon
TTTGGAATGCATTCAGATTTAGGCAAAGTAATTCAGAGTTTGCTAGATGAGTTCTGGAAAAGTCCTCCGGCCTTGACGTCAGATCCCACCTTTCCTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017119:ENSDART00000078675:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=NA C2=0.015
Domain overlap (PFAM):
C1:
PF057438=UEV=FE(48.1=100)
A:
NA
C2:
PF057438=UEV=PD(28.4=69.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]