HsaINT0180808 @ hg38
Intron Retention
Gene
ENSG00000155975 | VPS37A
Description
VPS37A, ESCRT-I subunit [Source:HGNC Symbol;Acc:HGNC:24928]
Coordinates
chr8:17268258-17268956:+
Coord C1 exon
chr8:17268258-17268372
Coord A exon
chr8:17268373-17268855
Coord C2 exon
chr8:17268856-17268956
Length
483 bp
Sequences
Splice sites
5' ss Seq
AATGTATGT
5' ss Score
5.87
3' ss Seq
TCATGTATTGTTACTTTCAGTTT
3' ss Score
7.59
Exon sequences
Seq C1 exon
ATTGCTTCCTCCACAGTTTCCTCAGGAAAAACCAGTGATCAGTGTTTATCCACCAATACGACATCACTTAATGGATAAACAAGGAGTGTATGTTACCTCTCCATTAGTAAACAAT
Seq A exon
GTATGTATATGGGATAATTTATTTCAGGGTAATATAATAGGTGTATTACTTTTCTACTAAATATTTTAGAAATCTGAAATGCATTTAAAGTTTCATTTTGTCATGAGTACTTTTTTTAAAAATTGAATATTTAAGACTACGCCTTAAAGTTCTTACAATATGATATGGTTGATTGTGAAAGATTATAACTTCCATATACTCTAGTATTTACCTTTGAACCCTCAAATTATTGTAAATAGTCAAGTAAGGAAATATTTTGGCTCCATTTTTTATTCAATGGACTTTTAACCTGTTTACTAATCACCAGATATTTATGGTATCGATTCTATAAGAAAATGCTATAACTTGTTAATTGCTAATATCCTTTTTCATTTAATTCTTGACCTGCAAAAGTAAGTTAATATTTAGAGTGACATTATCCTAATGAGACTTTATAATCTTTTTCTGGAAGTGATTTTAAGCGTCATGTATTGTTACTTTCAG
Seq C2 exon
TTTACAATGCACTCAGATCTTGGAAAAATTATTCAGAGTCTGTTGGATGAGTTTTGGAAGAATCCTCCAGTTTTAGCTCCTACTTCAACAGCATTTCCTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000155975:ENST00000324849:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF057438=UEV=FE(46.9=100)
A:
NA
C2:
PF057438=UEV=PD(28.4=67.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGCTTCCTCCACAGTTTCCT
R:
AGGAAATGCTGTTGAAGTAGGAGC
Band lengths:
214-697
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains