DreINT0174582 @ danRer10
Intron Retention
Gene
ENSDARG00000075441 | vwa2
Description
von Willebrand factor A domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-100302-1]
Coordinates
chr12:30199480-30200223:-
Coord C1 exon
chr12:30199672-30200223
Coord A exon
chr12:30199603-30199671
Coord C2 exon
chr12:30199480-30199602
Length
69 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
AACTGTTGTTCTTTTTACAGATG
3' ss Score
10.13
Exon sequences
Seq C1 exon
GTTGTCTGGGTCAGGCTCTGGACCTTGTGTTTGTTCTGGATGCCTCCAGTGGTGTCGGCAAGGAGAATTTCATTCACTTTCAGGATTTTGTTCGGAGCACTTCAGTGCAGTTTGACATTAATCGAGATGTGGCTCAGGTGGGATTGGTGGTTTATGGGAGGCGTCCAGTCACGGTCTTTGACTTGGACAAGTACAATTCGGGCTCCGCTGTGCTGAGGGCTGTGGGGGACGCCGCTTTTCTGGGTGGGAAGGCTTCTGTAGGTTCAGCCCTGCTCCATGTGCTCTCCCAAAGCCTGACGGTGGGGAAGGGAGCACGTCCTGGAGTCAACAAGGCTGTGGTGGTGCTGACTGATGGGACGGGTGTGGAGGACGCTGCGGTGCCTGCACAGAAGATCCGTGATAGCGGAGTGTCCATATTCTTAATTGGAGTTGGGGACATCCAGCAGGAGCTTCTTCTCCGCATCTCTGGCTCTGAGGATCACATGATCACCGTGCCTTCATACGATGACCTAAAATACTCAGAGGATGTGCTGGTACAGATGGTGTGTTCAG
Seq A exon
GTAAATCAGGAGCAAATGTTCCTCTTTGAAAGCTGATGCATTTATGTTTAACTGTTGTTCTTTTTACAG
Seq C2 exon
ATGTGAAGAAGCCTGTAAACCTTTGCAGTCCAAACCCCTGTATGAATGATGGCATCTGTGTGATGCTGAATGGGAGTTACCGCTGCGAATGCCGTGGCTGGAAGGGTCCACACTGCGAAACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075441:ENSDART00000152985:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.071
Domain overlap (PFAM):
C1:
PF0009223=VWA=WD(100=94.1)
A:
NA
C2:
PF0000822=EGF=WD(100=71.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTCCGCATCTCTGGCTCT
R:
GCGGTAACTCCCATTCAGCAT
Band lengths:
183-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]