RnoINT0163999 @ rn6
Intron Retention
Gene
ENSRNOG00000025581 | Vwa2
Description
von Willebrand factor A domain containing 2 [Source:RGD Symbol;Acc:1562000]
Coordinates
chr1:277727201-277728170:+
Coord C1 exon
chr1:277727201-277727752
Coord A exon
chr1:277727753-277728044
Coord C2 exon
chr1:277728045-277728170
Length
292 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
GGGCACATGCTCCTTTGCAGAAG
3' ss Score
4.78
Exon sequences
Seq C1 exon
GCTGCCAGGCACAGTCACTAGACCTGGTCTTCCTGTTGGATGCCTCTGCCTCAGTGGGAGGTGAGAACTTTGCTCAAATGCAGAGCTTCATCAGGAAATGCACCCTCCGCTTTGATGTGAATCCTGACGTGACACAGGTTGGCCTGGTGGTATACGGTAACCAGGTGCAGACCGCTTTCGGACTTGACACCCATCCCACCCGTGCTTCTGTGCTGCGGGCCATGAGCCAGGCCCCCTACCTAGGGGGTGTGGGCTCTGCTGGCACAGCCTTGCTGCACATTGAGGACAAGGTGATGACGGTCCAGAGGGGAGCCCGCCCCGGTGTCCCCAAGGCTGTGGTGATGCTCACAGGTGGCAGTGGGGCAGAAGATGCAGCTGTCCCTGCCCAGAAGCTGAGAGACAATGGCATCTCAGTCTTGGTAATGAGTGTGGGAGCTGTCCTCAAGGAGGCAGTGAGGAGGCTTGCTGGTCCACGGGACTACCTGATCCATGTGGCAGCTTACACAGACCTGCGGTACCATCAGGACACGCTCATCGAGTGGCTATGCAGAG
Seq A exon
GTGAGTGGGAGTAAGTACATGTCCCTTAGGGCTGTCTTGACACAGGACCTTTGCCCGAGCCTTTACACGTGTTGTTGTGAGGAAGACAGCTCCCTAGTCCCCACTTGCCAGGTGTGAGCGTATGTGCTAAACCCTATAATCCCACAAAGGTCTCCAGTGTTACCGCTCATGTGCCAACCTGTTGCTGCAGGACCACGGGAGACACTGGGGTGTTAACCCAGCCCCACAGACTATATGATTGAGCTGAGTTTGCTTGGATCTGACCCAGACCTGGGCACATGCTCCTTTGCAG
Seq C2 exon
AAGCCAAGCGGCCAGTCAGCCTCTGCAAACCTAGCCCATGCATGAATGAAGGCACCTGTATCCTGAAGAACGGCAGTTACCGATGCGAGTGCTGGGGTGGCTGGGAAGGCCCCCACTGTGAGAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025581:ENSRNOT00000051834:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009223=VWA=WD(100=93.5)
A:
NA
C2:
PF0000822=EGF=WD(100=72.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGGTGATGACGGTCCAGA
R:
CATGGGCTAGGTTTGCAGAGG
Band lengths:
307-599
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]