GgaINT0044702 @ galGal3
Intron Retention
Gene
ENSGALG00000008980 | VWA2
Description
NA
Coordinates
chr6:29207365-29210765:+
Coord C1 exon
chr6:29207365-29207916
Coord A exon
chr6:29207917-29210642
Coord C2 exon
chr6:29210643-29210765
Length
2726 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TCTGACTGTATTTGTTGCAGAAG
3' ss Score
8.26
Exon sequences
Seq C1 exon
GCTGCCAGGTGCAGTCTCTTGATTTGGTGTTTGCAGTGGATGCCTCAGCTGGAGTTGGCCTGGCGAATTTTCTGCAGCTGAGGGACTTTGTCAGGAGCAGCTCTTGGCAATTCACCATCAACCGGGATGTCACCCAAATTGCCCTTGTGGCCTATGGTAGCAGAGCTCGCACCGTGTTCGCTTTGGACACCTACACAAACAATTCAGCTCTCCTCCAAGCCATCAACCAGATGCCTTTCCTTGGGGACGTGGCCTCTGCCAGCAGTGCCTTACTCCACATTCACAGTGATGTGATGACGGTACAGAAAGGAGCAAGGCCTGGTGTCAGCAAGGTGGTGGTGCTGCTCACAAATGGAGGTGGCATGGAGGATGCAGCTGCCCCGGCTCGGCACCTGAGAGACAACGGTGTCATGGTGTTTGTGGTTGTCATTGGGGATGCAGAGAGGGACACACTGCTGAGGGTTGCTGGGTCTCCCAGTTACCTGGTGCACATCTCTTCCTATGAAGATCTGCAGCGTTACCAAGACCTCATCACTGAAAGAATCTGTGAAG
Seq A exon
GTGAGAATGTCCTAAGCTTGCTATTTGTGCTGCTTCCAGCAGCTTGTGGTAAACTGTAAAACAAGCACAGAGGGGACTTTCTTCTGTAGCCCTTGTTATTGTAGGCTTTATGATGTTTTAATGAGTGATCTTGTTGTCACTTCCAGTTAACAGCTGGGAAGACCAGATCATATTGAGATCTGGTGGTTGTCCAAAGCGATCCTAATGGGAATAGGAGGCAGCTTTCTCGAGGTTCAGAGCAGGTGGTGAGATCAGGCTTCATGTGACTGCTCTTTCCATCCCTCTCACGTCTATGTTCTGCCTTCACTGACAGCAAAAAATTTGCTCTTTTTTTTTGTCATGGCTTTAAATCTGTAGAATTTACTGTGCGTTGCTGTAAGCTCTGCAGTGTAGTTGAGGAGAGTGAAGGGCATGCATTTCTGCAGCCACCTGTGTCGGTCCTTTAGTGAGTACTCTGCTGTCTCCTTCAACAGCTTCGTGCACGTGTTCCTCCTCAGTGTCCCACTATGAGACACTGAAGATTTTGTTGGCATTGAACAGCATTTAATCCTAAATCAGGATCTGTCTGAAGCTTGCATAGTGATAAATGGAGGTCTTCAGACAACTTCTACTTAATTTTGTTTGCAGGACCAAAATCCTTGGCTCTGAGGCATTCAGGAGGGCACAATTTTCAATTATTCATGTCTGAGATTGTCTGTGCAAAAAAAAAAAAGTGTTCTTTCTTCACAATTTCACATATTGAGGACCAGTCCCCAGCTGGGAAAAAATGAACTCTGAAATCAAGTTTGAGACACTGATGTACTGAGTGTGAGTGCTTCTGTTTGATTGAAATGAGCTTTTCAGAAAGGGAAGCAACCTGGGTTTTTAGGCATTAATGGTGGGGAAAAGCTTCTAGTTCCTTGCTGCTCCAGCTGATCCACCTCGTTTCGCGTTCAGGATAGTCTAACATCTATTTCTGTGGTCTGGTGTTTTAACCCCTATGTAAGATCAAATGAAGAAGCAATTAGAGCAATGCTGTGATTAACAGCGCAGTCAGAGGTTGTCTTAATGTACTGGCATGCTGTGGCTCTTTGGGGGTTAGAAAAGACTGCAGAGCTGTCTCTGTGGGCTGAGCAGTCTGTCTCCTGGCAGGCTTCTGCAGGCAGTTTCTACCTGGAGCTTTTCAGTCTGCATCTACTGTGTATTTTCGGCTGTGTTATTATCAAAACAATCTACTGTACCATGAAATGAACCACGAGGCCACAGGTGAAGGGGAAGAGTCTGCAAGGTTCAGTGATTCTGGGTAATAACATATTTCCTGAGACCGAATTGTTGCTTTCATTTCATGTGCAGGCAATCACTGTTTGTACGTATAGGCTGGGGCCAAGGTTGATGGAAAGATAAGCCCTTCATTCAGTCTTCTGCTCCAAGTCCAAGGCTTAATAACAGAAGCACTATCTGTGAAAGGACTAAAAGAAAAAATGACTCATGATAAAAGCATGTGAAAAACAGCCCCTGCCTCTGGACACCTGGAGTATCGTGTTTGTTCTGAGGCATGGCTGAAAGGCCAGAAAAAAATGTCTTGGGCTCTAGGAGAAAAGATCCGAAGCAATAATTATATGTAATATCTGTCTAATGAAAGCACAGCCTCCTGGGGTCATTGTGGGGTGAAGTGAAAGATGCTTATTTAAGGTGATGCAGTGTTAACGGTGGGTTTGAGTGCAGGGTGATGAAATGAAAGGGAGTGAAATTGTTCAGATTTCAGTAGGTATCGATAGAGAACTGCCAATCTTAGGTATGTGTTTGAGTATTGGTGTGTATCAGCACATCTATGTGGGGAGAATGGCTATTGTGTGCTGTAATGTGTAATGAGCATTCTGGTGGATAGGGGGTGGAGTTTATTTTCTTTCCTTCTCCTTCCTTTCCTATTCCCACTGTCTGCTTTTTTACCTACTGTGGAGCTAAGGGCAAGGCTGCAGGTCCAGACTACACCACACAGTGGTTCGGTGAAGGAATTTCACACCCTTCCCAGCTCTGCTGCTGAGGTGCCAGAAGGCTGGAAGCAAATTCCTCTGGGATGCTGCTACTTAACCCAGTGCATCCACAGCATGGAGCCCTGCCAGCCCTGCTGACAGCTGAGCTCTGCTCTCTTAAGGGGGCTGGGAAATCTGTCACGTACTTCAAAAGAACAGAGCTAATAACAGCTTAGGCTGCGGTTGTGGGCTTTTCTCTCTAATCTCCAAGGAAAAAAAAAAAAAAAAAAGCCCTGAAATATTTCTTTTGTTGTTTTCCACTCATTTGTGGATGATTTCTTGTTCTTGCTTCTCTCACGTATAAGCTCAGCTCCTCTCCAGAGCACAGCGGGGTTTGAGCTCCAGTGGTGTTTGGGGTTGTGAACTGCTTGAGGTGTGTGTGTTGCTCTGCACTGGCAATGTCTGGACGTGGGGGCTTAGAGGTGCTTGTGTGTTCAGCACACAGCTCTGAAGATGCTCCATTATAGGAGCAGAACATGTAGCAAAGCCAGCCTTTCTCTTCCATTCATTAAACACAGAGGAGTTTGTTGCAGGCTTACACCCTCTGCCAAATGTGTGTGTTTTGTGTTCTGCTATCCCCAGATGACATTTTCTGGAGTTTGGATTATTAAATTGCTGCCATTGCTCTCTGAAGGATTGCTGATGGATATGCATTTAACAATTAATACTCCCTCAATGTGCCTGACCCCTCTGTTCTGACTGTATTTGTTGCAG
Seq C2 exon
AAGCAAAAAGCCCTGTGAACCTGTGCAAACCCAACCCGTGCATGAACCAGGGCGTGTGCATCCTCAGGCCAGGAAGCTACTGGTGTGAATGCCATGGATGGGAAGGACCCCACTGCGAGAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008980:ENSGALT00000033088:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009223=VWA=WD(100=93.5)
A:
NA
C2:
PF0000822=EGF=WD(100=71.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]