DreINT0175246 @ danRer10
Intron Retention
Gene
ENSDARG00000044801 | wdr38
Description
WD repeat domain 38 [Source:ZFIN;Acc:ZDB-GENE-050417-160]
Coordinates
chr21:5760593-5760869:+
Coord C1 exon
chr21:5760593-5760673
Coord A exon
chr21:5760674-5760743
Coord C2 exon
chr21:5760744-5760869
Length
70 bp
Sequences
Splice sites
5' ss Seq
GTGGTATAG
5' ss Score
1.27
3' ss Seq
ATTTCTCCTCTTCTCCACAGGCA
3' ss Score
11.8
Exon sequences
Seq C1 exon
AGCGGTGCGCTGCTGGAGGAGCTGAAGGGTCATAATGCAGCTGTTCAGAGCAGCGTTTTCTCATCCGACTCGCAGTCTGTG
Seq A exon
GTATAGGAGATGAGATATCTCTGTGCTGAGTCTGTTTGTTTGGAGTCGTCATTTCTCCTCTTCTCCACAG
Seq C2 exon
GCAACGGGCTCCTGGGATCGAGCCGTGAGAGTCTGGAAGCTGCGGGATCGTCAAGCTGAGGCCATGGTGTTGCAGGGGCACCTGGGAAATGTGGCGTGTCTCTGTTTTTCTGTCGCTGGGATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044801:ENSDART00000065848:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PU(64.1=92.6)
A:
NA
C2:
PF0040027=WD40=PD(30.8=28.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGTTCAGAGCAGCGTTTT
R:
CAGCATCCCAGCGACAGAAAA
Band lengths:
169-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]