HsaINT0182095 @ hg38
Intron Retention
Gene
ENSG00000136918 | WDR38
Description
WD repeat domain 38 [Source:HGNC Symbol;Acc:HGNC:23745]
Coordinates
chr9:124856240-124856600:+
Coord C1 exon
chr9:124856240-124856320
Coord A exon
chr9:124856321-124856468
Coord C2 exon
chr9:124856469-124856600
Length
148 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
CTCACAGAAGCTGCCTGCAGGCC
3' ss Score
-2.04
Exon sequences
Seq C1 exon
TCCGGCCAGATGCTGCGCCTCTTAGTTGGGCACCGTGACTCCATCCAGAGCAGCGACTTCTCACCCACGGTGAACTGCCTG
Seq A exon
GTGAGCCTACCCTCTGCCCTGGGCCCCACCTCAGTGGCCCCATACCCACTTGGAGCTGAGTGGTGGGAAGGGGATGGACTCTGGGTCCCGCCTAGATGCAGAGTGGGTGGAGAGCTGGCTGGGCCAGACTCACAGAAGCTGCCTGCAG
Seq C2 exon
GCCACCGGCTCCTGGGACTCCACCGTACACATCTGGGACCTGCGGATGGTGACCCCAGCAGTCTCCCACCAGGCGCTAGAGGGACACAGTGCCAACATCAGCTGCCTGTGCTATTCAGCATCCGGCCTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136918:ENST00000373574:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146551=RAB3GAP2_N=PD(22.7=55.6),PF0040027=WD40=PU(64.1=92.6)
A:
NA
C2:
PF0040027=WD40=PD(30.8=27.3),PF0040027=WD40=PU(62.2=52.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGCTGCGCCTCTTAGTTG
R:
AGGAGGCCGGATGCTGAATAG
Band lengths:
205-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains