DreINT0175369 @ danRer10
Intron Retention
Gene
ENSDARG00000016903 | wdr5
Description
WD repeat domain 5 [Source:ZFIN;Acc:ZDB-GENE-040426-2082]
Coordinates
chr21:18248976-18249276:+
Coord C1 exon
chr21:18248976-18249059
Coord A exon
chr21:18249060-18249220
Coord C2 exon
chr21:18249221-18249276
Length
161 bp
Sequences
Splice sites
5' ss Seq
GCGGTTAGT
5' ss Score
5.46
3' ss Seq
TTGTTTGTTTGTTTTTTTAGGTT
3' ss Score
12.18
Exon sequences
Seq C1 exon
TTTGACGAGAGTGTGAGGATTTGGGATGTTAAAACGGGGAAATGTCTGAAGACACTTCCAGCACACTCAGACCCTGTCTCTGCG
Seq A exon
GTTAGTGTTTTTTATTTTTTTATTTTTTTATTTTTTTTTTTTTTTTTACTTCATCTGGATGATTCAATTCACAATTGTGTACAACTGACATCAATTTAAGTGATTTCTTTGAATTATAATTGTGTATTTGTTTTTTTGTTGTTGTTTGTTTGTTTTTTTAG
Seq C2 exon
GTTCATTTCAACAGAGATGGCTCATTGATTGTGTCCAGCAGTTATGATGGACTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016903:ENSDART00000019750:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF034989=CDtoxinA=FE(23.5=100),PF0040027=WD40=PD(20.5=28.6),PF0040027=WD40=PU(44.1=53.6)
A:
NA
C2:
PF034989=CDtoxinA=PD(1.7=10.5),PF0040027=WD40=PD(50.0=89.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGAGTGTGAGGATTTGGGA
R:
TCCATCATAACTGCTGGACACA
Band lengths:
131-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]