MmuINT0175383 @ mm10
Intron Retention
Gene
ENSMUSG00000026917 | Wdr5
Description
WD repeat domain 5 [Source:MGI Symbol;Acc:MGI:2155884]
Coordinates
chr2:27520828-27525161:+
Coord C1 exon
chr2:27520828-27520911
Coord A exon
chr2:27520912-27525105
Coord C2 exon
chr2:27525106-27525161
Length
4194 bp
Sequences
Splice sites
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
3' ss Seq
TCTCTTCCTCTATTTTGTAGGTT
3' ss Score
10.99
Exon sequences
Seq C1 exon
TTTGATGAAAGTGTGAGGATATGGGACGTGAAGACAGGGAAGTGCCTCAAGACTTTGCCTGCCCATTCGGACCCAGTCTCAGCC
Seq A exon
GTAAGTAGTCTTCCTGGCCTGTCCTCAGAAGTTCCTCTGGATGAGCCGACTTGATTTGCTCACGTGTAGCATCCCAGTGACCAGAGGCCTGTGAGCTGTGGTGGGTGGTGGGTGGTAGGTGGGGCACTCTGTGGGCTGGGAGGTAGATGACAGGGATTTTTCAAGAGGGGTGTCCTTCCTTGAATGGGCTTTTTCAAAATGGGCTGACAGTTTGGAAAATAGGGAGTCATGAGAATTTTAAGTGAGTGAGGTGAGATCCTAGGGTTTCTATTATTCTGATAAAACACAGTGGCCAAAAGCAACTTGGAGTGTCCTAAGCTTGTGTTATTGTTGCTATGATGAAACACCATGACCAAAAACAAGTTAAGGAAGAAAGGGTTTTTTTTCCTACATTTCCATATTGTAGCCCATCACTGAAGGAAGTCAGGGCAGGAACTCAAGCAGGGCTGAAACTTGGAAGCAAGACTGATAGAAAGGCTGTGGAGAAGTGAGTGAGTGAGTGCAGAAGTGAGTGAGTGAGTGCTGGCACTCAGAAGACAGGGGTAGGCCTGATCTACACAGTATGACTTCTAGGATAGCCTGGGCTACGCAGAGAAACCTTGTCTCAGAAAAAAGTGACTGCTGCTTACTGGCTTGCTTTTCATGGCTTCCTCAGCCTGTTTCTTATAGAACTCAGGACCACCAGCTCATTCTGCTGGCCCTCCCATCAGTCTCTAATTTAAGAAAATGTCCTGCCGGATGTGGTTGTGCACGCCTTTAGTCCCAGCACTTGGGAGGCAGAGGCAGACGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACAGAGAAACCCTATCTCGAAAACCCCCAAAAAAAAAAAAAAAAAAAATGTCCTGCAGGCTTGCTTATAGCCCAATCTTACGAAGGCATTTTCTCAATTGAGGCTTCCTCTTCTCTAATGACTCTAGCCTGTGTTGTCAAAGTGATGTACAAGAAGAAAAGATGGTCTTTGTCGTTGTCGTTGTTTTTTTTTTTTTTTTAAAGATTTATTTTATTATTTATTATATGTAACTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGAGTCAGATCTTGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAACAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCCTGTCGTTGTTTTTTTAAGGCAGGGTCTCTAGCCCTTGCTATCCTAGAACTCAGTATGTAGACTAGTCTGGTCTTGAACTCAGTGATCTATCTGCCTCTGTGTCTTAGAGTTTTCATTGTTGTGAAGAAACACCATGATCACAGGAAACCATTTAATTGGGGCTGGCTGACAGATACTTGAGTGGTTTAGGCCATCATCATGGTGGAAGCTGGCAGACATCATGAGCTGAGAGTTCTACATCCACATCAGCAAGTAGCAGGAAGAGAGTGACAGACACAGGGCCCGGCTTGAGCTTTTTTTCTGTTTGTTTTGTTTTTCAAGACAGGGTTTCTCTGTATAGCCCTGGCTATCCTGGCACTCACTTTGTAGACCAGGCTGGCCTCGAATTCAGAAATCTGCCTGCCTCTGCCTCCCGAGAGCTGGGATTAAAGGTGTGTGCCACCACCCTGGCATTTTTTGGGGGGCTGGGAGGGTTGAGCTCCTGAAACCTCAGTCACCCCTCCTAAACACACTTCTCCAACAAGGTCATACCTCTTAGTAGTGCCATTCCCTATGAGCCTATGGGGGCCATTTTCATTCATATACTCTGCCTCCTGAGTGCTGGAATTATATATAGGTGTGCCCATCCCTCCCCTCTGTGTGTGTGTGGTGGTTTTTTTTTTTTTTTTTAAACATTTCAAATGTTATCCCTTTCCAGGTCTCCCCTTCCAGAAACCTCCTGTCCCATCCTCTCTCCCCCTGCCTCTATGAGGGTGCTTCCCCCACCCCCCCTTTCCAGCCCTGGTATTCCCCTACACCAGGGCATCAAACCTCCTCAGGCCCAAGGGCTGTTCCTCCCACTGATGTCCAACAAGGCCATCCTCTGCCACATATGGGGCCAGAGCCATGGGTCTCTCCATGTGTGCTCTTTGGTTGACAGTCCGGTCCCCAGGAGCTCTGCGGGGTCTGTCTGGCAGTGCCCAGTAGATTTTCACATCACCGTTGCACAATTGAAGGAAGTTAGGACAAGAACCTGGAGGCAGGAGCTGGAGCAGAGGTCCTGAAGAACATTGCTTACTGTCTTATTTGTGCCTTAGTCATTTTAAGTTTTCATACCTGCCTAAAGGTGGCATCACTAACTGTTGAGGCCCTGTATCATTAATTAATCAAGGAAACGCCCCGTAGATCGCTACCGGCCAGTCTTAACAGAGGCATGTTCTCAAGATTTCCTTTTTGTGCCTGCCAGGCAGTCGTGGCGCACACCTTTAATCTCAGCTCTCGGGAGGCAGAGGCAGATGGATTTCTGAGTTGGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAACCAACCAGGACTATACAGAGAAACCCTGTCTCAAAAAAAAAAAAAAAAACAAAAAAAAAAACTGTCTGAGAACACCCTGCACAGCCGCTTGCCCTTATCCCATTTTGGTTCCTGGAGCTGTGGTCACTTGAACCTTTGGCCAGCCATTCCCGTCTGTTGGGCAGATGGCAACTCAGGTAGCTTTTTACTGAGTTCGAGGCCAGCATGTTCTACAAAGTGAATTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTGGAAAAACCAAAAAAAAAAGGGGGGGGGCCTAGGTCTGTGCCAAGTTGATGACTCAATTAATGCCCAGCCTTGAAGCCCTTTTGTATACTCTCCCTAGCTATAGCCTTTGCCTGTATCAGTGTCCCCTCAGCCGTTCACTGTGTCTCATCCCCAGTAGGGAGTCCTGTTGACTGGTACCCTGTGGGCTGGCTTGCTTGTTTCTCCAAGCTGCTACCTGCACATTGGCTGCATGGAAACGTCGGGGGCCCATGTTTGCCCCTTACCACATTATGTTTGACAATTTGTTTCGTATATTAAAAGTAGAGGTAAATGTGGGTAGTTAGTTGTATTGCCTGACCTAAGGAAGGAACTCTAGTGACTGACAGTTGTGGCTGAGTAGCTGTTCAGGATCTGACATGCACTTGTCAACAGGAGAAAGTGACCTCTGGCTCTAGTGCTTTAGACCAGGCTGGCCCATCAGGTCTGTGATGGCAGAGTCCCTGGAACCTGATGGCTGCTTACAAGTGAGCCCAAGAAGCTGAAGCTGGAACATTTCTCAAGTTTGTCACCATATCATGCACTGAGAGTTCCTATGTAAAAAGTTTATCTTGAGTCACACCTACCAAAGACTCAGTGAAAGTTATAGAAATTTGGGGAGATAGATTCAATTCCTGGCACTAAGATTTAAGCAGGGTTGGACTGTGACCCAGTATCTGGTACACAGGTAGAATGCTTGCCTAGTATGCTCCAGTCCTTGGATTCCATCTCCAGTATTGTATACAATAAACACAGGCATGGTGTTACAGGCTTGTAAGCCCAGCACTTTGGTAAGGGGCAGGAAGATTAGGAGTTAGAAGCTATAGCTACTTAGTAGATTCAAAATCAACCATAGCTGCATCCTGTCTCAAAAAGTAAGACAAACTGAAAACAGTAAGTTATAAGGGCCTGGAGTTACCTGAAGGGCACCAGGGACTCACTGAAATTTGCATATTAGCCTAAGCGTCTCCTCTGAGACACAGTTTATGGTGGCCTGGCTCTCATTGCTGGGACTATATACCACTGAGCATCTAGAGTGGCAGTGATCTAGATATCAGAAACTCAGGCTGATGAATGAACACAGGCCACCTGTGGACCAGTCTCCTGACTTTAAGCTCTTGCTTTTTTGCTGGTGAGAAAGAGAAGGTGCCCCCCCACCCCCACCCCAAGTTGTATTAGCTTTGTCAGGTGCTCAAAGGGGATTGTGGTGAGCTCTGTGGGCAAGATGCCCTCGAGATTTAGATAAACATACTACTGTAGTACTTATTAGAAACCAGCTTGGGGGCGGAGAATAAAATATGGAGTGTAAAAGAATAAAAAAGAGAGAGAGAGAGAAATCAGCTTCTCTTCCTCTATTTTGTAG
Seq C2 exon
GTTCATTTCAACCGTGATGGATCATTGATTGTTTCCAGTAGCTATGATGGCCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026917:ENSMUST00000113952:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(20.5=28.6),PF0040027=WD40=PU(38.5=53.6)
A:
NA
C2:
PF0040027=WD40=FE(46.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types