GgaINT0124971 @ galGal3
Intron Retention
Gene
ENSGALG00000002659 | WDR5
Description
NA
Coordinates
chr17:7884579-7885714:+
Coord C1 exon
chr17:7884579-7884662
Coord A exon
chr17:7884663-7885658
Coord C2 exon
chr17:7885659-7885714
Length
996 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
3' ss Seq
CCTCTTTTATAATATTGCAGGTG
3' ss Score
9.78
Exon sequences
Seq C1 exon
TTCGACGAAAGCGTGAGGATATGGGATGTGAAAACAGGGAAGTGCCTCAAGACATTGCCTGCTCATTCTGACCCTGTTTCAGCT
Seq A exon
GTAAGTCCTTTCTGATAAATGAACACACTAACATACTTATGCTCTTATTATGAAAGCGTGAGGATATGGGATGTGAAAACAGGGAAGTGCCTCAAGACATTGCCTGCTCATTCTGACCCTGTTTCAGCTGTAAGTCCTTTCTGATAAATGAACACACTAACATACTTATGCTCTTATTATGATACCCTTACAAAATGTAGTGAATGGGCTGTGGTTTGTGGATGGTTGTTGCTGGATGAGAACAAAATTAAGAGTCTTATCTGTAAGGCTTATGTGGGTCTGTGTCTTGAGCCTCAGTGTGGGGAGCAGTGAGTAGTGATGTGCTGGTCATGTCTGAGTCTGGCAGTGTGATGCTGGGGTATGGACTGGTGATCACTTGAGGAATGGAGAGCAACTTGGAACTGCTGTACCTCTGTTGCTTTCTTGTTCCAAGCAATTGCTGAGGTCTGGAGCAGGGTAGTTTCAGAGTACACTCCAATCTTGTTAATTCATTTTGTGAAAATGACTTGGATTGCCATCGTATCCCTTCAAATGCAGGAAAAGAAGGTGTTCATCTCTTAATATTTTTGAAGTGGAGGAAACACTAAAAGAATGTTGAGCCTCAGTTGTGTTAAAGGATACCTGCTTTAATATGATTGGTCTGGTTGTTCTACTTTATAAGTGTGAAATGTCTTCTAGATAAATGTATGTTAGTAGTAATTATTACCTTAAACTGCAGGATTTTCAGGTGTAGTTGAAGGCAGTCAGTTGACCTCAGAACGGGTGAGGCTATATATGGGGTGAGGCTATATATGGGGTGAGGCTATATATGGGGTGAGGCTATATATGGGGTGAAGTTGTGTGTTAAAATCTTAAAGTGTTATCCTCAGGTTAGACACTACTATGAATTAAGCAGCTGATGTCAGCATTGGAAGGTGAATACTTGTGGTGGGGCTTAAAAATTTGATGCTTATGAACAAAGTAAAGTTATTTCCTCCCTCTTTTATAATATTGCAG
Seq C2 exon
GTGCATTTTAATCGTGATGGATCCCTGATAGTGTCAAGTAGCTATGATGGACTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002659:ENSGALT00000004189:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(20.5=28.6),PF0040027=WD40=PU(38.5=53.6)
A:
NA
C2:
PF0040027=WD40=FE(46.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]