DreINT0176205 @ danRer10
Intron Retention
Gene
ENSDARG00000102414 | wu:fd14a01
Description
wu:fd14a01 [Source:ZFIN;Acc:ZDB-GENE-030131-5336]
Coordinates
chr22:293916-294213:-
Coord C1 exon
chr22:294099-294213
Coord A exon
chr22:294009-294098
Coord C2 exon
chr22:293916-294008
Length
90 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
3' ss Seq
TGTCTTGCAACTACATTTAGGGG
3' ss Score
5.49
Exon sequences
Seq C1 exon
TGGAGAATCTGGTGCAGGAAAGACTGTGAACACGAAACGTGTCATTCAGTACTTTGCAACTGTTGGTGCCATGTCTGGAGCAAAGAAACAAGAGCCTGTTGCTGGAAAAATGCAG
Seq A exon
GTCAGAGAACACCTATTTTAGACACCTATTTTTGTTATTAATTACAGCATTTGTAGTTATAACTATGCTCTGTCTTGCAACTACATTTAG
Seq C2 exon
GGGTCACTGGAGGACCAGATTGTGGCAGCAAACCCTCTGCTGGAGGCTTATGGTAATGCCAAGACTGTGAGGAATGACAACTCCTCTCGTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102414:ENSDART00000098072:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGCAGGAAAGACTGTGA
R:
GGCATTACCATAAGCCTCCAGC
Band lengths:
167-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]