GgaINT0127773 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:452558-452854:-
Coord C1 exon
chr18:452743-452854
Coord A exon
chr18:452651-452742
Coord C2 exon
chr18:452558-452650
Length
92 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GAACAATTATCATCCTGTAGGGA
3' ss Score
5.69
Exon sequences
Seq C1 exon
CGGAGAATCTGGTGCAGGGAAGACTGTGAACACGAAACGTGTCATCCAGTACTTTGCAACAATTGCAGCTAGCGGGGAGAAGAAGAAGGAGGAGCAGCCTGGCAAAATGCAG
Seq A exon
GTGAGCTCTTTTGATGAACAGACTTAAGACTCAGCCTTTAATTGCTACATGGATTAAATATACACTGTAAATGAACAATTATCATCCTGTAG
Seq C2 exon
GGAACACTTGAGGATCAAATCATCAGCGCCAACCCATTGCTGGAGGCCTTTGGAAATGCCAAGACTGTGAGGAATGACAACTCCTCACGCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023832:ENSGALT00000039878:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.289 A=NA C2=0.065
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.5=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAATCTGGTGCAGGGAAG
R:
CATTTCCAAAGGCCTCCAGCA
Band lengths:
169-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]