DreINT0177147 @ danRer10
Intron Retention
Gene
ENSDARG00000006978 | zak
Description
sterile alpha motif and leucine zipper containing kinase AZK [Source:ZFIN;Acc:ZDB-GENE-070912-386]
Coordinates
chr9:2902090-2902826:-
Coord C1 exon
chr9:2902764-2902826
Coord A exon
chr9:2902189-2902763
Coord C2 exon
chr9:2902090-2902188
Length
575 bp
Sequences
Splice sites
5' ss Seq
AAGGCATGT
5' ss Score
2.03
3' ss Seq
ATACTTATGTCCACCTTTAGGAC
3' ss Score
8.99
Exon sequences
Seq C1 exon
ACTGAAATCGAGAAACTGACCCACGACTACCTGAATCTGTTTCACTTTCCTCCGCTGATCAAG
Seq A exon
GCATGTGATCTTCATATTGCTTTTTATATAATGTTTAATGGGGACCTATTATGCATCCTTTTTACAAGATGTAAAATCACGTCTCTAGAGTGTGTATGTAAAGTTCCAGCTCAAAATACCACACAGATAATGCTTTATATCTCTAAAACTGACCCTTTCAGGCTTTGATGGTAACTGTGGTGTTTTGCTGACTGTCGCTTTAAATTCTAATGAGATTGTGTTCTTTTCGAAAGAGGGCGGAGCTATGAATGCCTGTGTGTCAGCATAGTGGCAGATTCAAAAACAAGACTAACGTCCTATGCTAATTAGTGAAAGCTGGTCACTAGTGGGCGGGGCTTTCACCCTCTGATGATGCGTACATTGGGAGAATGTCAATCAAAGTGTTTCTGCAGACTGCTTTGATCTAGTGTGATTATAAACAATAGGAATAATTCATGTTTACCTTTAGAAGCTGGTTATATTCACACACTGTTGGCACACAACTGTGTTTAAACCCCTATAAAAGTGATTTATGCATAATAGTTCCCCTTTCATATCAGTTTATGTGCGCTTTTCATACTTATGTCCACCTTTAG
Seq C2 exon
GACGGTTCGGCCTCTGAGGAAGCAGACGAGGACTGGAGCAAGACAGTGAACCTGGAGCTGGTGTTTGGGTATCACTGGAAAGCAGGCACAGGACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006978:ENSDART00000102823:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764712=SAM_2=PD(8.6=28.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]