HsaINT0184418 @ hg38
Intron Retention
Gene
ENSG00000091436 | MAP3K20
Description
mitogen-activated protein kinase kinase kinase 20 [Source:HGNC Symbol;Acc:HGNC:17797]
Coordinates
chr2:173238373-173239496:+
Coord C1 exon
chr2:173238373-173238435
Coord A exon
chr2:173238436-173239403
Coord C2 exon
chr2:173239404-173239496
Length
968 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TGCTTGGTTTCCTGTTTTAGGAC
3' ss Score
11.49
Exon sequences
Seq C1 exon
TCAGCCATTGAGAAATTAACCCATGATTACATAAATTTGTTTCACTTCCCACCACTAATTAAG
Seq A exon
GTAAGTAAGGTTTTTCTTACCGACACTAATGCTACCTTTATTGACACATGCACCTGCTGCATCCACACCTAAATTTGCCAATGTCAGTAATGGTTGTTTGAAGTGAAATTTCATCATATCTGTCTAACAAAAGGCCCTTTGAAGCAAGGGAAGTGTATAAATTGAACACCCTTGTTCCCCACAAGTTGAAATATTAACAATTTGTTCATGATAAGAACAACACACCTTACTTTAGTGGCTAGGAGTTGTAAGTGCCAACATTATCGGTGAGGTCCTGTGGCCTCCCACCTGGCCCTGGATACTTTTCAACATGTAAGTCACTGAGAGAATTCATACCCTGGAGCGCTCGATCGTCAACTTTCATAGGGGATGGGAGGTTTACTGTTTGAATAACATATTAGTATACTTAACATTTTGAATCTAGTTTAAAGGAATATGGCATACTTTGTTTAAAATCAGCAAATACTTGCAATTCATACACAGAACTTTACTTATTCACTAACAGCTATAGTTTTTCATCTCTAAGCCCTCAAAGACTCGTTTTGTTCCTCTGCTTCATCCTCCATCCACATTTGCATCCTCCATCCACTGCGTAATCCGTCTTTGGGAATAGCTTGTAAATGCCCTGGGTATTGTGAACCTCTGAAGTTGAAATCTCACAATGCATCTCTAGGTGCTAAGTGCATTTCTAGGGTAAAATTGCACAATGCAAGATGCACTGTGATAAATGTAAGACAGTGACATTCAATTTGAACTGCATGAAATAAATCATTTGGCAAAGTCCTGAAAGGCATAATATGTCATTTCTGTTGGTTGATGTAATTAGAATTTGTAGCTTAATCCAAAATAACCAAAAGTTAATAGATTAGAATAGAAAAAAAAAAAAAACTAGTGCCAAGATATCATCTTCTTTACATGAGAAGTAAAAACAACATCTAGAATAATTGGTGCTTGGTTTCCTGTTTTAG
Seq C2 exon
GACTCAGGAGGTGAACCTGAAGAAAATGAGGAAAAAATAGTGAACCTGGAACTGGTTTTTGGTTTTCACTTGAAACCAGGAACTGGCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000091436:ENST00000375213:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.137
Domain overlap (PFAM):
C1:
PF0053625=SAM_1=PD(8.3=28.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains