GgaINT0047339 @ galGal3
Intron Retention
Description
NA
Coordinates
chr7:18653314-18654519:-
Coord C1 exon
chr7:18654457-18654519
Coord A exon
chr7:18653407-18654456
Coord C2 exon
chr7:18653314-18653406
Length
1050 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
3' ss Seq
TTTTTTTTCTTTTTTTACAGGAC
3' ss Score
12.95
Exon sequences
Seq C1 exon
ACTGCTATTGAGAAGTTAACCCATGACTACCTAAATCTGTTTCATTTTCCACCATTAATTAAG
Seq A exon
GCAAGTCTCACTGTTTATATATGAAGTGCTTCTCGTGTTGGTATAAATACTTCCCTGCTCTCGTGTTTCAGCTTTCTGCCCTTGGCAGGAGGGTGAGGCAGCCGCTCACATAGCAGCTCCGCCACTGCCTTTGACACATGTGGAGGGTCACCAGCAGGAACGGGCTGCATGAGAACAAGTGGTATGATAATAGATGTTGTTTTCAATGAGGATCCCAGATGTTGTCATGAAACCAGTGCTGGGTCCGATCTTGTTCAACGTCTTCATCAGTGACCTGCATGATGGGATAGAGTCCACCCTTGGCAAGTTTGCTGATTATACAAAGCTGGGAGAAGTGGCTGACATGACAGAAGGCTGTTCTGTCATTCAGTGGGACCTCGACAGACCGGAGAGTTGGCCAGAAAGGAACCTGATGAGATTCAACAAAAGCAAGTGTAGAGTGTAAAGAAATAACTGCATGCATCAGTACAGGTTAGGGGCTGTCCTGCTGGAGAGGAGCTCTGCAGAAGAGGACCTGGAGGTCCTGGTGAACAACAGGTTGGCTGTGAGCCAGCAGTGTGTCCTTGTGGTCAAGAAGGCCAATGGTATCCTGGGATGTATTAAAACATCCCAGGTCAGCATGGTCAGCGGGTTGAGGGAGGTGATCCTCCCCCTCTACTCTGTCCTGGTGAGGCCACAGCTGGAATACAGTGTCCAGTTCTAGGACCCAGTTCAAAAAACAGGGATCTCTTAGAAAGAGTGCAACGGGGAGCGACAAAGATGATAAAGGATTTCTGGAAGAAATCCCAAAAGGGAAAATGAAAACCTCTGAACATCACTACCGTGCTGTGATTGCAGTGCTGGTGGCTGCTGCAGTGTCATGAAACTGTGAAGCAGGAACCAGCCAGCATCTCCCAGCAGAACCATGGCCCTCTGCTGCAGGTGACAAACTGAGTGGCAGGCTTGTGACATAGGAAAGGCAAATCCTTGTTCCCAGAAAAGGCCTTGCGTTTGCCTCTTAGAGGGCTGAGGTAGGTACAAGCTCTCACCCTTTTTTTTCTTTTTTTACAG
Seq C2 exon
GACTCTGCGGGTGAAGCTGAGGAAAACATAGAGAAAGTAGTGAATCTTGAACTCGTTTTTGGCTATCACTTAAAGCTGGGAAATGGTCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009344:ENSGALT00000015215:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053625=SAM_1=PD(8.5=28.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]