DreINT0177150 @ danRer10
Intron Retention
Gene
ENSDARG00000006978 | zak
Description
sterile alpha motif and leucine zipper containing kinase AZK [Source:ZFIN;Acc:ZDB-GENE-070912-386]
Coordinates
chr9:2893391-2893895:-
Coord C1 exon
chr9:2893821-2893895
Coord A exon
chr9:2893542-2893820
Coord C2 exon
chr9:2893391-2893541
Length
279 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CGGTGCTGTGTTTGTCGCAGGGT
3' ss Score
9.24
Exon sequences
Seq C1 exon
CCTCCTTTCGTGATGGATAAATGGATAGTGGGAATATCTGGCACACATACTGTTGACTACATAGTGAACTATGAG
Seq A exon
GTGAGTACTAGACAAAACACTACAGGTAATATGAAATAACACTTTATATATGTATATATATATATATATATATATATATATTTATATATAACCTTATTGCATGTAGCTTTCTATATAGTGTCAAATTGATATTGTATATTCTGTATATTTAAATATTGCAATGCAGTGTTTATGGTATGGTATATTTATGGATATGGTATATACTGTATATTTAAGTATTTAAATGCAGTGTTTTAAGTGGCCTGGGAGTGTGTTCAGCCGGTGCTGTGTTTGTCGCAG
Seq C2 exon
GGTAACGTGAAATCTCCGAAGTGTACAAGACACGTTCACACAGTGCAGTGGAGTGCAGACAGCGGAAAAGACGTGATCAAACCTGTGGAGCTGGTCATCGAGACGGCGCCGGGCATCAGGGAGGCGCACAACAGGAGCAGGTCCAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006978:ENSDART00000102823:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.275
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTTTCGTGATGGATAAATGGA
R:
GAGTTGGACCTGCTCCTGTTG
Band lengths:
224-503
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]