GgaINT0047342 @ galGal3
Intron Retention
Description
NA
Coordinates
chr7:18638059-18639352:-
Coord C1 exon
chr7:18639278-18639352
Coord A exon
chr7:18638210-18639277
Coord C2 exon
chr7:18638059-18638209
Length
1068 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
GTTGTGTCCTTCCTGAGCAGAGC
3' ss Score
6.15
Exon sequences
Seq C1 exon
CCACCGTTTGTCATGGAGAAGTGGATCGTGGGGATCGAAGAACACCAGTCTGTAGAATGTATTGTTACCTATGAG
Seq A exon
GTAAGTTCTAAGAAACAATGTGTTTATCTAAGATAACCTGTATGGGAGATGTGCCAATAGCATCCCACAGCTCCGCTGTATCCTGTAATCAAGTCTCAGCACCCTGTAATTAATTGTAAAATCTGAAGTTTGGAGCAAAAGCTGAATGAGATTTACAAAGAGTGTGTCCTCAGGCAGCTGCCTGGGACGGCTCTTTTTCTCAAGGACAAAAATTCCTTCTACTCGAAGTGTATCGGCCAATGTGCTCACATTGCTGGGAGGCTGTGGTTTTTTTTTTTACCTTTTCAGTGAAGTGCTAATTGGGAGAGCTGAGGAGCAACAGGAGAAGAAAGAGAATGATAAGTCAAAAGTAAGAGAGTAAAACAAAATATCAAAGACAATTTAGCCATGTAAAATGAGAGAAATTAGCCTTTGTAAAAAGAGCTTGCGGTTGCTTACAGAAGTGTTTTTATGAAGACCAATGCTGTGCTTCACAGTGAGGCTAATAATTGAGATTCCAGCTCTGTCGTGGGCAAGGATTCAAGCACTGATGGAGTGATGAGGAAATCTTGTACCTTTTTGGGTTGTCTCAGAAGCGAAGAACAACAGTTTTCTGTTGCTCTAGGTTTCTTTCAGCCTTTCAGAATTGCAGGCCGCGTGGCTCCTGTAACTGTAGTACTTGATACTCCAAGAAAGCAAATGTGGAGCGTTGCCCTGCAAAAATACCTATTTGGTCCTACCTCTTTTAGCAGAAGGCGCTGCCTATCTGGTGTTCACATTATATGACAAGTAAAATACTCTTTGTATTTGTAGAGGAAGGCCTTCAGATCTTTCCTCCACATGGTACATGAATTGGAACACTTATTCACTGCCACATTTTTAGCATAATCATAAAATACCAGCCAAATTTATCTAGTCTAAAAATACATGAGAACTGGCTAAGTGGTTTTGCAAAACAAACTGTATTCAGAGTGCTGCTGCCACCCAGGCAGTAGTGGAAGTTCCCGGGCAGGAGAGCTTAGTGGGTTGCGTGTTGCTATGTCCTCACATGCCTTGTGTCCTTATGTGTGTTGTGTCCTTCCTGAGCAG
Seq C2 exon
AGCGACGTTCGAGCTCCCAAATCCACCAGGCACGTCCAAGCTATCTGCTGGAGCAAGGTGAAAGCACAGGATGAGGTCAAGGCGGTACAGCTTATGATACAGACCTCGCTCCCCAACTCAGAGGGGCATTCACGGAGCAGGTCTGTCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009344:ENSGALT00000015215:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.127
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCGTTTGTCATGGAGAAGT
R:
GACAGACCTGCTCCGTGAATG
Band lengths:
222-1290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]