DreINT0177875 @ danRer10
Intron Retention
Gene
ENSDARG00000077987 | zfat
Description
zinc finger and AT hook domain containing [Source:ZFIN;Acc:ZDB-GENE-130204-2]
Coordinates
chr16:25434210-25434607:+
Coord C1 exon
chr16:25434210-25434442
Coord A exon
chr16:25434443-25434522
Coord C2 exon
chr16:25434523-25434607
Length
80 bp
Sequences
Splice sites
5' ss Seq
ATAGTGAGT
5' ss Score
6.97
3' ss Seq
ATCGTATTTTTCATCTTCAGGTC
3' ss Score
10.72
Exon sequences
Seq C1 exon
GTAAGCTTTTCTGGTACCAAGTGCACTACAATACACATGTGCGAACACACACGAGAGAGCACCTCCATTACTGTTCTCAGTGCAGTTATTCCTCCATCACGAAAAACTGCCTGAAGCGGCACGTCATTCAGAGGCATTCAGACATCCTGCTGAAGTGTCCCTCTGAAGGATGCCAATACTGCACACCTGATAAATACAAGCTTCAGGCTCATCTCAAAACCCACTCGGACATA
Seq A exon
GTGAGTTTTGAAGACTATATTTATTCTGGAAATATTGGCAAAATGTCTTTATTAGCAAAAATCGTATTTTTCATCTTCAG
Seq C2 exon
GTCAAAAAGAGTTTTACGTGCCCAGTGTGTCAAGAATCGGTTCCTGAGGATAAAGTTAGAGCTCATACCAAGATCAATCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077987:ENSDART00000156351:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.103
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=33.3),PF134651=zf-H2C2_2=PU(44.0=14.1)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(48.0=41.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCCATCACGAAAAACTGCC
R:
CGATTCTTGACACACTGGGCA
Band lengths:
183-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]