DreINT0177950 @ danRer10
Intron Retention
Gene
ENSDARG00000071683 | zfr2
Description
zinc finger RNA binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-070705-184]
Coordinates
chr22:4675706-4678085:-
Coord C1 exon
chr22:4678000-4678085
Coord A exon
chr22:4675802-4677999
Coord C2 exon
chr22:4675706-4675801
Length
2198 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
GATGCGTGTTTTATCCACAGGCT
3' ss Score
9.83
Exon sequences
Seq C1 exon
TGTCAGAGAAAGACCCTCCGGATCTTCTGAACAGGATCAAGTGCCTTGAGTATTTAGCGGCTCTGCGACATGCTAAATGGTTTCAG
Seq A exon
GTAAATTTACCATCATTTAGTATGTGTCATACATGTTTAATTGTAACCTTACCAGTGCCTTAAATGTATTTATCTTTGATGCAATTAGTTACAATTTAATGCAGTTTTTGTTGCCAGGAGTAACGGTTAAAGGATAACATTACAACGATGGTTAGCTACACTTTAGCATAAACCTGAAGCATTTTGTATGCAAGTGTCTGTCTCTACTGTCAACGCAAGTTTGGTTTAGTTGTATTTTGTGCCAATATAGCAGAACATAATTAGTAACATGTCAGTAGTTTCAGATATTGCCAGAAGGGGGTGCTATTGGTGATGTTAACGCTGATTGATACTTCTGCGTCAAGCTCACGCTTATGGTTCGGCACAGCCTTCGCACAGTCACAAAGCCCTAGCTGAGGCTGACGCTAATGCGCACCTCTCAAAAAATGTAACTAAATGTCGCAATGACACGTATCGCAAGCTCTGTGATTAGTCTTTTCGGTAGCGATGACGTGCATGGGTGGTGCTGAAAGCCAACCCGTGAGCCCGTTGGAGCGAGTGTTTACAAGTGTCAAGTCCCGTAAAAGGAGCTCCAGATGGAAACTTCTGTTTTGTGTTTACCTCATGATTGTCGCATGTCCGCCAGTTCCCGCCTCTGAATGAGCGAGTTTTAGCTACTTGTAGTATTCAAAAAAGAACTAAATTCGACAAAGAGGAACATAAAAACCTACTGCGTGCTAGTGTTTTGGAAGTGTTATTTCAGGGCAACACACAGCGCACAAAAGTATAAATGCACGACTACGCGCCAGGATTGCGCCCTGGGTCACTCCGATTGCTCAATGCAGAATATAAGTCAGCCTTTAGCATGATAATTAGGCTGGCTTGTGTAGCAAGCCAGACTATTGTTATCCTATTTTTCTTCTTAGACTAAAAATTAAACTCTATCTCCTCCTAGAGCTTTCGAGCTATGACCACCAAACTCACACCAGACCTCCAAACTGGTCTGACTCGGGTTGCTATATCTTTTTGGTCTGATCCGACTTTCGTTTTTCCGGAAAACGTCCCGGGACCGTCGGAAAAATCCCATTGACTTAACATTGCACCAAACTTTGTGAGCTCATAACTCTGCATCAGACTGTCCTACCGACTTCTAGCTGGGCTCATTTAACTCAGACTACCTAACTGCCAATAACTGATGAGCTTTTAACTTTCTGGCCACCCCCTAGCAACCACTTTTGGGACCCTAGAAACTGTCCCATAGACTTCCACTGCAAAAGACTCTCATTGACTTTAAATTGGGTCAAACTTTGTGAGCTCATAACTCTATCTATCCATCTATCCATCTATCCATCTATCCATCTATCTATCTATCCATCTATCCATCTATCCATCTATCCATCCATCCATCCATCCATCCATCCATCATCAGGCTTTCACAAGCCAGCCTCAAAGTTTGTTCTCAAACTTTAAGAATCTAGTTCTTCTACAGTTTATTTAGAATCAAGTTAAATTGGTTGTCAGCTAGCTAGCATGTTAGCTAGCTGACTAACTGATTCATTTGTTGTTGATAAACATGTTCCGCAAAACTGTAGAGTTTTTAGGTACGCATGTACAATATGTTTTCAGTTTAAACCACTGTGTAATTTAGCATTTTTAAATTACAATTTACATTGGTATTCGCTAAAGTGCTATTTTAGCCATTATTGTTGTGCATTAATGAAATGTAAAATACATAAACTATAACATTCTACACATTTTTTAAAGCATTTTAAGATGATTAACTAAGTTTTTAGCTTACAAATTAGCTATTGTCAAAGCTACACATGGGTCACGGCTCGCTGAATTTTGTTTTAGACTTGCAACATACTGTAGCCACTACTGTCCACACAGTACTAATTTATTCGTATTATAAATGGCAGAATGTAATTACTAACATATTACTAGTGTGCTTTAATTTAATTATTCCCAATAAGGGGTTTTATACTGGATGTTAAAGTGAACTTTCTGCTTCTGTGGCTAGTTTTCTTAGTAGCTGGCAAGAAACTAGCATAGAAGCTAGCTAACTATTTAATAAGTTGTAATTTAGCGGCTACTACAGTGGCTGAGTGTTTACATACTTGCATAAAGTATGCTTTAGGCCTTTGCTTAATTTAGAATTAGCAATTTTTAGTTAGCGTGTACATTGTTAGCCGTGTTTATGATGCGTGTTTTATCCACAG
Seq C2 exon
GCTCGGGCCAATGGACTTCAGTCTTGCGTCATCATTATTCGGGTTCTGCGGGATCTCTGCCAGCGCATACCAACATGGGGAAAGATGCCAAACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071683:ENSDART00000122341:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.153 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(11.7=100)
A:
NA
C2:
PF075289=DZF=FE(13.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]