MmuINT0180108 @ mm9
Intron Retention
Gene
ENSMUSG00000034949 | Zfr2
Description
zinc finger RNA binding protein 2 [Source:MGI Symbol;Acc:MGI:2143792]
Coordinates
chr10:80711729-80712005:+
Coord C1 exon
chr10:80711729-80711823
Coord A exon
chr10:80711824-80711909
Coord C2 exon
chr10:80711910-80712005
Length
86 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
3' ss Seq
AACTGTGTCTCCTCCCCAAGGCT
3' ss Score
6.29
Exon sequences
Seq C1 exon
GACAGCAAGACGCTCTGTCCGACCCAGAGGACGTCTTAGACCGGGAGAGGTGCCTTGAGACCCTGGCAGCCCTCCGCCATGCTAAGTGGTTCCAG
Seq A exon
GTCAGGTCATAGGGTGGGCTGCAGTGGGGACAGTCACCAACCAGTCTACCCCATAGTTCCCCAACCAACTGTGTCTCCTCCCCAAG
Seq C2 exon
GCTCGAGCCAGCGGCCTGCAGCCGTGCGTGATTGTCATCAGGGTTCTGAGGGAGCTGTGCCGCTGCCTGCCTCCCTGGGGGGCCCTGCCTGCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034949-Zfr2:NM_001034895:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.243 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(25.2=100)
A:
NA
C2:
PF075289=DZF=FE(12.6=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTCTGTCCGACCCAGA
R:
ACAGCTCCCTCAGAACCCTG
Band lengths:
143-229
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: