MmuEX0053771 @ mm9
Exon Skipping
Gene
ENSMUSG00000034949 | Zfr2
Description
zinc finger RNA binding protein 2 [Source:MGI Symbol;Acc:MGI:2143792]
Coordinates
chr10:80711729-80712541:+
Coord C1 exon
chr10:80711729-80711823
Coord A exon
chr10:80711910-80712005
Coord C2 exon
chr10:80712430-80712541
Length
96 bp
Sequences
Splice sites
3' ss Seq
AACTGTGTCTCCTCCCCAAGGCT
3' ss Score
6.29
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GACAGCAAGACGCTCTGTCCGACCCAGAGGACGTCTTAGACCGGGAGAGGTGCCTTGAGACCCTGGCAGCCCTCCGCCATGCTAAGTGGTTCCAG
Seq A exon
GCTCGAGCCAGCGGCCTGCAGCCGTGCGTGATTGTCATCAGGGTTCTGAGGGAGCTGTGCCGCTGCCTGCCTCCCTGGGGGGCCCTGCCTGCCTGG
Seq C2 exon
GCCATGGAACTGCTGGTGGAGAAAGTTCTGAGCTCTGCACCCCGGCCCCTGAGCCCAGGGGATGCCATGCGTCGGGTCCTGGAGTATGTGGCCACAGGTGCGCTCCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034949_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.243 A=0.000 C2=0.123
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(25.2=100)
A:
PF075289=DZF=FE(12.6=100)
C2:
PF075289=DZF=PD(6.7=23.7),PF075289=DZF=PU(52.9=97.4)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACCCAGAGGACGTCTTAGA
R:
CTGTGGCCACATACTCCAGGA
Band lengths:
173-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types