MmuEX0053771 @ mm10
Exon Skipping
Gene
ENSMUSG00000034949 | Zfr2
Description
zinc finger RNA binding protein 2 [Source:MGI Symbol;Acc:MGI:2143792]
Coordinates
chr10:81248984-81249796:+
Coord C1 exon
chr10:81248984-81249078
Coord A exon
chr10:81249165-81249260
Coord C2 exon
chr10:81249685-81249796
Length
96 bp
Sequences
Splice sites
3' ss Seq
AACTGTGTCTCCTCCCCAAGGCT
3' ss Score
6.29
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GACAGCAAGACGCTCTGTCCGACCCAGAGGACGTCTTAGACCGGGAGAGGTGCCTTGAGACCCTGGCAGCCCTCCGCCATGCTAAGTGGTTCCAG
Seq A exon
GCTCGAGCCAGCGGCCTGCAGCCGTGCGTGATTGTCATCAGGGTTCTGAGGGAGCTGTGCCGCTGCCTGCCTCCCTGGGGGGCCCTGCCTGCCTGG
Seq C2 exon
GCCATGGAACTGCTGGTGGAGAAAGTTCTGAGCTCTGCACCCCGGCCCCTGAGCCCAGGGGATGCCATGCGTCGGGTCCTGGAGTATGTGGCCACAGGTGCGCTCCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034949_MULTIEX2-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.231 A=0.000 C2=0.053
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(12.6=100)
A:
PF075289=DZF=FE(12.6=100)
C2:
PF075289=DZF=FE(15.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACCCAGAGGACGTCTTAGA
R:
CTGTGGCCACATACTCCAGGA
Band lengths:
173-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types