BtaEX6039072 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000755 | ZFR2
Description
zinc finger RNA binding protein 2 [Source:HGNC Symbol;Acc:HGNC:29189]
Coordinates
chr7:21400997-21403087:+
Coord C1 exon
chr7:21400997-21401094
Coord A exon
chr7:21401494-21401589
Coord C2 exon
chr7:21402976-21403087
Length
96 bp
Sequences
Splice sites
3' ss Seq
ATGTGCTTCTTCCCCCAAAGGCA
3' ss Score
8.31
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
AAGGAACCGAGGTGCCTCTGCCGGACCCAGGAGACGTGCTGAGCCCAGAGAAGTGCCTGCAGGCACTGGCTGCTCTCCGCCACGCCAAGTGGTTCCAG
Seq A exon
GCAAGAGCCAGCGGCCTGCAGCCCTGTGTGATCGTCATCAGGGTCTTCCGGGACCTCTGCCAGCGCGTGCCCACCTGGGGGGCCCTGCCGGACTGG
Seq C2 exon
GCCATGGAGCTGCTGGTGGAGAAGGCCCTGAGCAGCACCAAGGGGCCCCTGAGCCCCGGGGATGCTGTGCGCCGAGTCTTGGAGTGCGTGGCCTCGGGGACACTCCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000755-'21-23,'21-21,22-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.000 C2=0.026
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(13.0=100)
A:
PF075289=DZF=FE(12.6=100)
C2:
PF075289=DZF=FE(15.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTGAGCCCAGAGAAGTG
R:
CTGTGAGGAGTGTCCCCGAG
Band lengths:
175-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]