DreEX0086443 @ danRer10
Exon Skipping
Gene
ENSDARG00000071683 | zfr2
Description
zinc finger RNA binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-070705-184]
Coordinates
chr22:4675510-4678085:-
Coord C1 exon
chr22:4678000-4678085
Coord A exon
chr22:4675706-4675801
Coord C2 exon
chr22:4675510-4675621
Length
96 bp
Sequences
Splice sites
3' ss Seq
GATGCGTGTTTTATCCACAGGCT
3' ss Score
9.83
5' ss Seq
TGGGTCAGT
5' ss Score
4.68
Exon sequences
Seq C1 exon
TGTCAGAGAAAGACCCTCCGGATCTTCTGAACAGGATCAAGTGCCTTGAGTATTTAGCGGCTCTGCGACATGCTAAATGGTTTCAG
Seq A exon
GCTCGGGCCAATGGACTTCAGTCTTGCGTCATCATTATTCGGGTTCTGCGGGATCTCTGCCAGCGCATACCAACATGGGGAAAGATGCCAAACTGG
Seq C2 exon
GCCATGGAGCTGATTGTGGAGAAGGCCATTAGCAGTGCGTCTGGACCGCTCAGTCCTGGAGAAGCTTTGCGGAGGGTCCTTGAATGCATCGCCACTGGCATTCTCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071683-'25-22,'25-21,26-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.153 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(11.7=100)
A:
PF075289=DZF=FE(13.0=100)
C2:
PF075289=DZF=FE(15.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGAGAAAGACCCTCCGGA
R:
GATGCATTCAAGGACCCTCCG
Band lengths:
175-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]