RnoEX0101814 @ rn6
Exon Skipping
Gene
ENSRNOG00000020416 | Zfr2
Description
zinc finger RNA binding protein 2 [Source:RGD Symbol;Acc:1304737]
Coordinates
chr7:11337287-11338241:-
Coord C1 exon
chr7:11338147-11338241
Coord A exon
chr7:11337962-11338057
Coord C2 exon
chr7:11337287-11337398
Length
96 bp
Sequences
Splice sites
3' ss Seq
CAGTGTGTCTCCTCCCCAAGGCT
3' ss Score
5.17
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
AACTGCAAGACTCTCTGTCTGACCCAGAGGACATCCTGGACCGGGAGAGGTGCCTCGAGACCCTGGCAGCCCTCCGCCATGCAAAGTGGTTCCAG
Seq A exon
GCTCGAGCCAGCGGCCTGCAGCCATGTGTGATTGTTATCCGAGTTCTGAGGGATCTGTGCCGCTGCCTGCCCCCCTGGGGGGCCCTGCCGGCCTGG
Seq C2 exon
GCCATGGAGCTGCTGGTGGAGAAGGTTCTGAGCAGTGCACCCCGGCCCCTGAGCCCAGGGGATGCCATGCGTCGGGTGCTGGAGTACGTGGCCACGGGCGCGCTCCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020416-'23-27,'23-26,24-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.188 A=0.000 C2=0.079
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(12.6=100)
A:
PF075289=DZF=FE(12.6=100)
C2:
PF075289=DZF=FE(15.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTGACCCAGAGGACATCC
R:
CACGTACTCCAGCACCCGA
Band lengths:
170-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]