GgaINT0110835 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:165953919-165954939:-
Coord C1 exon
chr1:165954842-165954939
Coord A exon
chr1:165954015-165954841
Coord C2 exon
chr1:165953919-165954014
Length
827 bp
Sequences
Splice sites
5' ss Seq
CAGGTTCGG
5' ss Score
6.2
3' ss Seq
GATTTTGTATTGCTCTTGAGGCT
3' ss Score
0.69
Exon sequences
Seq C1 exon
ATATAACCTCGGGTATGGTGAAAGATCCACCGGACGTCTTGGACAGGCAAAAATGCCTTGACGCTCTGGCTGCTCTACGCCACGCTAAGTGGTTCCAG
Seq A exon
GTTCGGAACATCATTTTACTTTCTTCTTGTAGCCTTATGAGAGATTAGTTCAGTCTCAATATAAGTGTTTAATTGTGTGAAAACACTCAGATTTGTTCATGTTAATTAACTCCATATTTTTCTGGTCCCTAAATTAAAATGTAGAAGGTTGAGGATGGAGGAACTGCTTTATGCAGTTATTGCAAATTTGACGGGGTTTTTTTTGTTTGTTTTTTTTCTGATGATTGAGAAAGAAATGTTGACACTTTGACTCGCTTGGGGTGATCATATATTGTATATTTGTTATATTTTCCATAAGGCTGCAGAGTAACTTTGCTTTAAATAATGGAATGTGTTTAAAACTTCGTGTTAGATTTAAGACTTTTCCTATTTCTTTAAGTGCATTAAGTGTAGAGAATGAAAGGTGAGAAGCAGCTGTCTGGTTTAGTGACTTTGAGTTCTGGCAAAGGCACAATAAAGAAACCAAACAGATTCCCTTGACCTTTCAGTCTCTATACCTACTTGTTAGAGACCTTTACTTTATCCTTTTTATTTCTAATATAGAAAGATACTGTATGTATTGTTACAAGTGAACACAGGTCAAAATGTACAGGGGATCAAGAAATGTTATTCTTGTATAACCTGGGCACTTTGACTTCTATCACCTTAAATTACTAACCCTGTATAAAATACTGCTGTAAATGGCAGCTCATGGAATAAACTTGTAGAATGATTTGTTTCAGTCTTGCATCTGAGCTTCCATTGCACAGTGGTGTTTTAGTCTTTCAACAAGTCCTATTTGCTGTAGGTGCTGGGCTTGATTAATTTGATTTTGTATTGCTCTTGAG
Seq C2 exon
GCTAGAGCTAATGGTCTGCAGTCCTGTGTGATTATCATACGTATTCTTCGTGACCTCTGTCAGCGTGTTCCAACTTGGTCTGATTTTCCAAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014545:ENSGALT00000023466:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(13.0=100)
A:
NA
C2:
PF075289=DZF=FE(12.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTCGGGTATGGTGAAAGA
R:
CCAGCTTGGAAAATCAGACCA
Band lengths:
190-1017
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]