HsaINT0185596 @ hg19
Intron Retention
Gene
ENSG00000056097 | ZFR
Description
zinc finger RNA binding protein [Source:HGNC Symbol;Acc:17277]
Coordinates
chr5:32379221-32380278:-
Coord C1 exon
chr5:32380181-32380278
Coord A exon
chr5:32379317-32380180
Coord C2 exon
chr5:32379221-32379316
Length
864 bp
Sequences
Splice sites
5' ss Seq
CAGGTTCGG
5' ss Score
6.2
3' ss Seq
GTTTTTATGTTGCTCTCAAGGCT
3' ss Score
6.17
Exon sequences
Seq C1 exon
ATGTAACCTCGGGTATGGTGAAAGACCCACCGGACGTCTTGGACAGGCAAAAATGCCTTGACGCTCTGGCTGCTCTACGCCACGCTAAGTGGTTCCAG
Seq A exon
GTTCGGAACATCATTTTACTTTTTTCTTGTAGCCTTATGAGAGAAGTAGTTCAGTACAACATGTTTAACTGTGCTTAAACATTTCAAAAGACTGCCCAAGCAATACTATTTTAAATTAAATATCAGAAAATATGTTAACATAGAAAGCTGGGTATGATGATCTGCATATTGCAGTTATTATTAATTTGACAATGAACTTAGGTTTGGGGAGTGTTTTGTAGTTGGGGTTTTTTTATTTTTTATTTTTAGTGGCTATATTTAAAGTTGACTTGTTTAGGAACATCACATGTTTGTGTATATATATTATATTCCATAAGGCTGCAGATTAACTTTGCTTTAAATAATGGAATATGTGTTTAAAGCTTTGTGTATAGTTTTAAGATTTTTTTCCCCCTCTTTCTCTAAGTTAATAAGTGTAGGGAGTGAAAGGTGAGGAAGCAGCTGTTTGGTTTAGTGACTTTGCAGTCATGCAAAGGCACAGAAGGGAAACCAAACAGATTTCCTTAACCTTTCAGTCCCTAGACAAACTTTTTAGCTCTTTACTTTTTCTTTTATTTCTAATGTAGGCAGACTTTTTTTTTTTAAGTTTACTGTTTTAAATGAACACAGGTCAAGGTTCACAGGGGATCAAGAAATATTATTCTTGTATAATCTGTTTACTTTGACCTAAATACCAGCTTTTAAATACTAACCCTGGCATAAAATACTGCTGTAAATGGCAGCTCATTGAATCCAATTTTAAGTGTGATTGTTTTTGTTTTTATCTGAGCTTCCATTGAACGGTGGTATTTTAACTTTTTTTCATCAAGGGATATATTCAGTATTTCTAAGATTAATTCAATTGGTTTTTATGTTGCTCTCAAG
Seq C2 exon
GCTAGAGCTAATGGTCTGCAGTCCTGTGTGATTATCATACGCATTCTTCGAGACCTCTGTCAGCGAGTTCCAACTTGGTCTGATTTTCCAAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000056097-ZFR:NM_016107:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.242 A=NA C2=0.010
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(12.9=100)
A:
NA
C2:
PF075289=DZF=FE(12.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTCGGGTATGGTGAAAGAC
R:
CCAGCTTGGAAAATCAGACCA
Band lengths:
190-1054
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)