MmuINT0180091 @ mm10
Intron Retention
Gene
ENSMUSG00000022201 | Zfr
Description
zinc finger RNA binding protein [Source:MGI Symbol;Acc:MGI:1341890]
Coordinates
chr15:12170816-12171854:+
Coord C1 exon
chr15:12170816-12170913
Coord A exon
chr15:12170914-12171758
Coord C2 exon
chr15:12171759-12171854
Length
845 bp
Sequences
Splice sites
5' ss Seq
CAGGTTCGG
5' ss Score
6.2
3' ss Seq
GTTTTTGTGTTGCCCTCAAGGCT
3' ss Score
6.35
Exon sequences
Seq C1 exon
ATGTAACCTCGGGTATGGTGAAAGACCCACCGGACGTCTTGGACAGGCAAAAATGCCTTGACGCTCTGGCTGCTCTACGCCACGCTAAGTGGTTCCAG
Seq A exon
GTTCGGAACATCATTTTACTTTTTTCTTGTAGCCTTATGAGAGAGTAGTTCAGTACAACATGTTTAACTATGCTTAAACATTTCAAACAATTGCCTAAACAACACTATTTTAAATTAAATCTCAGAAAATAAGTTACCATAGAAAGCTGAGTGTAACGATCTGCATTTTGCGGTTACTATTAATTTGACAATAAACAGGTTTGGGGGGTGTTTGTAGTCTGGGTTTTTTATTTTTAGTGGCTATATTTAAAGTTGACTTGCTTAGGAACATCACATGTTTTTGTATATATATTATATTCCATAAGGCTGCAGATTAACTTTGCTTTAAATAATGGAATATGTGTTTAAAGCTTTGTGTAGAGTTATAAGACTTTTCCTCTTCTTTCTCCTAAGTTACTAAGTGTAGGGAATGAAAGGTGAGGAAGCAGCTGCTTGGTTTAGTGACTTTGCAGACATGCAAAGGCACGGAGAGGAAACCAAACAGATTTCCTTAACCTTTCAGTCCCTAGACAAACTTTAGCTCTTTACTTTTCCATTTTATTTCTAATGTAGGCAGATTTTTTTCAGTTTACTGTTTTGTATGAACATAGGTCAAGGTTCACAGGGGATCAAGAAATATTATTCTTGTATAATCTGTTTACTTTGACCTAAATACTAGCTTTTAAATACTAACTCTGGCATAAAATATTGCTGTAAATGGCAGCTCATTGAAACCAATTTAAACGTAATTATTTTTATTTTTAATCTGAGCTTCCATTGAACAGTGGTATTTTAACTTTTTTTCACCAAGGGATATTTTTTATATTTCTAAGATTAATTCAGTTGGTTTTTGTGTTGCCCTCAAG
Seq C2 exon
GCTAGAGCTAATGGCCTACAGTCGTGTGTGATTATCATACGTATTCTCCGAGACCTTTGTCAACGAGTTCCAACGTGGTCTGATTTTCCTAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022201:ENSMUST00000122941:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.253 A=NA C2=0.030
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(12.9=100)
A:
NA
C2:
PF075289=DZF=FE(12.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTCGGGTATGGTGAAAGAC
R:
CCAGCTAGGAAAATCAGACCACG
Band lengths:
190-1035
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types