DreINT0177932 @ danRer10
Intron Retention
Gene
ENSDARG00000027109 | zfr
Description
zinc finger RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-378]
Coordinates
chr5:40528623-40529647:-
Coord C1 exon
chr5:40529550-40529647
Coord A exon
chr5:40528719-40529549
Coord C2 exon
chr5:40528623-40528718
Length
831 bp
Sequences
Splice sites
5' ss Seq
CAGGTTCGG
5' ss Score
6.2
3' ss Seq
TTGACTTCACTGCACTGAAGGCT
3' ss Score
2
Exon sequences
Seq C1 exon
ATGTAACCTCGAGTATGGTGAAAGACCCAGCGGACGTCTTGGACAGGCAAAAATGCCTTGACGCTCTGGCTGCCCTACGCCACGCTAAGTGGTTCCAG
Seq A exon
GTTCGGAACATCATTTTACTTTTCTTCTTGTAGCCTTATGAGATGTATTCCTTTTTTATTTGTTCATTTAAGTTGTTTAGTCTTTTTGTTTAAATTTTCAAACCTCAAAGTTGATTTTTGGGATGAAAAAGTGATACAAGGATGCAGTATAAAAATCTGGTGATTAATGATACTATATTTCTGTTTTCATTTGATCTGATCCTAAAAAAATAGCATCCTTGGATACATTATTTTATTCATAAGTGTCAGATTGATGTTAGCATGTAAAATGATTCCATAAGGCTGCAGAATACCTTTGCATAAAGTGTCATCGATTTAAAAGCTTTTCATGTTGAGCGTTTGTTTTCTTTTTGTGATTTATTTCTTTTTTTATTTCTTTATTTTTTTTTCTGGGAATAGGGATTGAGAGGCAAGGAATATCTGATTAGTTTACTGTGGTGTTGCTTTCTCTGCATACACACAGGCAAAGTAAAGCAGATTTCCTTGACTGCTTCAGTTCCTATGCAACTACTCTTGCAAACTGATCTTTTGTAAAATGAAAATAGATGTTTGTGAAGTATCTTGATGACTGAGGTCAGGGTTTACAAGGTTACAAAGGAGCCATTCCGAGTGAATCTTGCAAACTTTGAACTCTTGTACTAATGGTGAGGTAAAATACTGCTGGAAATGGCAGCTTATGGAAACCAATTGGCCCAGCTGATTAAAATCCCATTAAAAGCTTCCATTGTGAACAGTGGTGTTGCACCTCTCTCTGAACTCCGCCATATTGTATGACTGTTTGTACATCTTTGCTCTTGTGCATTAACTAATCTTGACTTCACTGCACTGAAG
Seq C2 exon
GCTAGGGCTAATGGACTCCAGTCATGTGTGATTGTCATTCGAATACTGCGTGACCTTTGTCAGAGAGTACCTACCTGGTCTGCATTTCCTAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027109:ENSDART00000074789:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(12.9=100)
A:
NA
C2:
PF075289=DZF=FE(12.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTCGAGTATGGTGAAAGACC
R:
CCAGCTAGGAAATGCAGACCA
Band lengths:
190-1021
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]