DreEX0086435 @ danRer10
Exon Skipping
Gene
ENSDARG00000027109 | zfr
Description
zinc finger RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-378]
Coordinates
chr5:40528623-40532695:-
Coord C1 exon
chr5:40532554-40532695
Coord A exon
chr5:40529550-40529647
Coord C2 exon
chr5:40528623-40528718
Length
98 bp
Sequences
Splice sites
3' ss Seq
ACAATTCGATCCATTTTTAGATG
3' ss Score
8.01
5' ss Seq
CAGGTTCGG
5' ss Score
6.2
Exon sequences
Seq C1 exon
ATGGTAACGCCAGAGAAATACGAGGTAAAGGGCTCCATCCAAGAGTCTGCCATTATCCTTACCTCTTGTGGTGATCCCAAGATGCAGGTGACCATCACCCTGACTTCACCCATCATTCGAGAGGAGAGCAGCCGGGACGGAG
Seq A exon
ATGTAACCTCGAGTATGGTGAAAGACCCAGCGGACGTCTTGGACAGGCAAAAATGCCTTGACGCTCTGGCTGCCCTACGCCACGCTAAGTGGTTCCAG
Seq C2 exon
GCTAGGGCTAATGGACTCCAGTCATGTGTGATTGTCATTCGAATACTGCGTGACCTTTGTCAGAGAGTACCTACCTGGTCTGCATTTCCTAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027109_MULTIEX1-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.081 C2=0.000
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(51.1=100),PF115043=Colicin_Ia=FE(78.3=100)
A:
PF075289=DZF=FE(12.9=100)
C2:
PF075289=DZF=FE(12.4=100)
Main Skipping Isoform:
ENSDART00000129415fB7205
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGATCCCAAGATGCAGGTG
R:
CCAGCTAGGAAATGCAGACCA
Band lengths:
169-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]