GgaEX0029056 @ galGal3
Exon Skipping
Description
NA
Coordinates
chrZ:9108504-9114529:-
Coord C1 exon
chrZ:9114388-9114529
Coord A exon
chrZ:9109422-9109519
Coord C2 exon
chrZ:9108504-9108599
Length
98 bp
Sequences
Splice sites
3' ss Seq
GCCAATTCAATCCATTTTAGATG
3' ss Score
7.16
5' ss Seq
CAGGTTCGG
5' ss Score
6.2
Exon sequences
Seq C1 exon
GTAATAAGTCCTGAGAAATACGATATCAAGTGTGCAGTCCCAGAAGCAGCAATAATTTTAAATTCATGTGTGGAACCCAAAATGCAAGTTACTATCACACTGACATCTCCAGTCATTCGGGAGGAGAACATGAGGGAAGGAG
Seq A exon
ATGTAACCTCGGGTATGGTGAAAGACCCACCGGACGTCTTGGACAGGCAAAAATGCCTTGACGCTCTGGCTGCTCTACGCCACGCTAAGTGGTTCCAG
Seq C2 exon
GCTAGAGCTAATGGTCTGCAGTCCTGTGTGATTATCATTCGTATTCTTCGTGACCTCTGTCAGCGTGTTCCAACTTGGTCTGATTTTCCAAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003235_CASSETTE2
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=0.242 C2=0.000
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(18.9=100)
A:
PF075289=DZF=FE(12.9=100)
C2:
PF075289=DZF=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTCCCAGAAGCAGCAATA
R:
GTTGGAACACGCTGACAGAGG
Band lengths:
183-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]