HsaEX0072698 @ hg19
Exon Skipping
Gene
ENSG00000056097 | ZFR
Description
zinc finger RNA binding protein [Source:HGNC Symbol;Acc:17277]
Coordinates
chr5:32379221-32385755:-
Coord C1 exon
chr5:32385614-32385755
Coord A exon
chr5:32380181-32380278
Coord C2 exon
chr5:32379221-32379316
Length
98 bp
Sequences
Splice sites
3' ss Seq
GCCAATTCAATCCATTTTAGATG
3' ss Score
7.16
5' ss Seq
CAGGTTCGG
5' ss Score
6.2
Exon sequences
Seq C1 exon
GTTATAAGCCCTGAGAAGTATGACATAAAATGTGCTGTATCTGAAGCGGCAATAATTTTGAATTCATGTGTGGAACCCAAAATGCAAGTCACTATCACACTGACATCTCCAATTATTCGAGAAGAGAACATGAGGGAAGGAG
Seq A exon
ATGTAACCTCGGGTATGGTGAAAGACCCACCGGACGTCTTGGACAGGCAAAAATGCCTTGACGCTCTGGCTGCTCTACGCCACGCTAAGTGGTTCCAG
Seq C2 exon
GCTAGAGCTAATGGTCTGCAGTCCTGTGTGATTATCATACGCATTCTTCGAGACCTCTGTCAGCGAGTTCCAACTTGGTCTGATTTTCCAAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000056097_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.052 A=0.242 C2=0.010
Domain overlap (PFAM):
C1:
PF075289=DZF=PD(51.1=95.8)
A:
PF075289=DZF=FE(12.9=100)
C2:
PF075289=DZF=FE(12.4=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGCTGTATCTGAAGCGGC
R:
CGCTGACAGAGGTCTCGAAGA
Band lengths:
178-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)