MmuEX0053756 @ mm10
Exon Skipping
Gene
ENSMUSG00000022201 | Zfr
Description
zinc finger RNA binding protein [Source:MGI Symbol;Acc:MGI:1341890]
Coordinates
chr15:12166145-12171854:+
Coord C1 exon
chr15:12166145-12166286
Coord A exon
chr15:12170816-12170913
Coord C2 exon
chr15:12171759-12171854
Length
98 bp
Sequences
Splice sites
3' ss Seq
GCCAATTCAATCCATTTTAGATG
3' ss Score
7.16
5' ss Seq
CAGGTTCGG
5' ss Score
6.2
Exon sequences
Seq C1 exon
GTTATAAGTCCTGAGAAGTATGACATAAAATGTGCCGTGTCTGAGGCAGCGATAATTTTGAACTCGTGTGTGGAGCCCAAAATGCAAGTCACTATCACCCTGACATCTCCAATTATTCGAGAAGAGAACATGAGGGAAGGAG
Seq A exon
ATGTAACCTCGGGTATGGTGAAAGACCCACCGGACGTCTTGGACAGGCAAAAATGCCTTGACGCTCTGGCTGCTCTACGCCACGCTAAGTGGTTCCAG
Seq C2 exon
GCTAGAGCTAATGGCCTACAGTCGTGTGTGATTATCATACGTATTCTCCGAGACCTTTGTCAACGAGTTCCAACGTGGTCTGATTTTCCTAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022201_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.253 C2=0.030
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(18.9=100)
A:
PF075289=DZF=FE(12.9=100)
C2:
PF075289=DZF=FE(12.4=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGAACTCGTGTGTGGAGCC
R:
AGACCACGTTGGAACTCGTTG
Band lengths:
167-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types